Results 61 - 80 of 88 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11098 | 5' | -59.1 | NC_002794.1 | + | 117665 | 0.66 | 0.830933 |
Target: 5'- gCCACGcGCGGc-GGCGCGUACUg-- -3' miRNA: 3'- aGGUGCcCGUCuuCCGCGCGUGGuac -5' |
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11098 | 5' | -59.1 | NC_002794.1 | + | 117848 | 0.68 | 0.742642 |
Target: 5'- -gCACGGaGCGcgacGggGGCugGCGCGCCAg- -3' miRNA: 3'- agGUGCC-CGU----CuuCCG--CGCGUGGUac -5' |
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11098 | 5' | -59.1 | NC_002794.1 | + | 118248 | 0.67 | 0.797232 |
Target: 5'- gUCgGCGGGCuGGAGGUcggccggggcgGCgGCGCCGg- -3' miRNA: 3'- -AGgUGCCCGuCUUCCG-----------CG-CGUGGUac -5' |
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11098 | 5' | -59.1 | NC_002794.1 | + | 122970 | 0.67 | 0.789322 |
Target: 5'- gCCugGGGUGGcuguacgcgcgccuGGUGCGgGCCGUGc -3' miRNA: 3'- aGGugCCCGUCuu------------CCGCGCgUGGUAC- -5' |
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11098 | 5' | -59.1 | NC_002794.1 | + | 137069 | 0.69 | 0.684785 |
Target: 5'- gUCgGCGGGCucuu--CGCGCGCCAUGu -3' miRNA: 3'- -AGgUGCCCGucuuccGCGCGUGGUAC- -5' |
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11098 | 5' | -59.1 | NC_002794.1 | + | 138921 | 0.67 | 0.797232 |
Target: 5'- aCCGCGG-CGGAuggucugccGGUGCGCccccACCGUGg -3' miRNA: 3'- aGGUGCCcGUCUu--------CCGCGCG----UGGUAC- -5' |
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11098 | 5' | -59.1 | NC_002794.1 | + | 139491 | 0.66 | 0.814393 |
Target: 5'- --gAUGGGCGc-GGGCGCGCugCAg- -3' miRNA: 3'- aggUGCCCGUcuUCCGCGCGugGUac -5' |
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11098 | 5' | -59.1 | NC_002794.1 | + | 140035 | 0.69 | 0.644292 |
Target: 5'- cCCGCGGGCGGcgggagacacggaAAGGgGCuCACCAc- -3' miRNA: 3'- aGGUGCCCGUC-------------UUCCgCGcGUGGUac -5' |
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11098 | 5' | -59.1 | NC_002794.1 | + | 140905 | 0.74 | 0.38557 |
Target: 5'- aCCGCGuGGCGGGaccugcAGGCGCGCugCcUGc -3' miRNA: 3'- aGGUGC-CCGUCU------UCCGCGCGugGuAC- -5' |
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11098 | 5' | -59.1 | NC_002794.1 | + | 141424 | 0.67 | 0.788436 |
Target: 5'- cUCGgGGGCGGcgGGGGCGCcggggGCGCCGg- -3' miRNA: 3'- aGGUgCCCGUC--UUCCGCG-----CGUGGUac -5' |
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11098 | 5' | -59.1 | NC_002794.1 | + | 141527 | 0.66 | 0.822744 |
Target: 5'- gCCuggGCGGGCugcucgccGAAGGCGCGaaucCGCCAc- -3' miRNA: 3'- aGG---UGCCCGu-------CUUCCGCGC----GUGGUac -5' |
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11098 | 5' | -59.1 | NC_002794.1 | + | 142396 | 0.67 | 0.752016 |
Target: 5'- aCgGCGGuGCAGgcGGCGUcggcgGCGCCGg- -3' miRNA: 3'- aGgUGCC-CGUCuuCCGCG-----CGUGGUac -5' |
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11098 | 5' | -59.1 | NC_002794.1 | + | 143072 | 0.66 | 0.814393 |
Target: 5'- cCCGCGgcGGCAGAcguaguggAGGuUGCGCGgCGUGu -3' miRNA: 3'- aGGUGC--CCGUCU--------UCC-GCGCGUgGUAC- -5' |
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11098 | 5' | -59.1 | NC_002794.1 | + | 143532 | 0.69 | 0.644292 |
Target: 5'- cCCGCGucCAGGAGGCGCggcacgaGCACgGUGg -3' miRNA: 3'- aGGUGCccGUCUUCCGCG-------CGUGgUAC- -5' |
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11098 | 5' | -59.1 | NC_002794.1 | + | 147073 | 0.74 | 0.375173 |
Target: 5'- gCCGCGGGCGcccgguccaaggacGAAGGCGUcgGCGCCcgGc -3' miRNA: 3'- aGGUGCCCGU--------------CUUCCGCG--CGUGGuaC- -5' |
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11098 | 5' | -59.1 | NC_002794.1 | + | 152678 | 0.67 | 0.797232 |
Target: 5'- aUCGCGaGCuGggGGUGUGCGCCu-- -3' miRNA: 3'- aGGUGCcCGuCuuCCGCGCGUGGuac -5' |
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11098 | 5' | -59.1 | NC_002794.1 | + | 158744 | 0.67 | 0.779509 |
Target: 5'- gCC-CGGGUAGu--GUGCGCGCaCGUGg -3' miRNA: 3'- aGGuGCCCGUCuucCGCGCGUG-GUAC- -5' |
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11098 | 5' | -59.1 | NC_002794.1 | + | 176542 | 0.66 | 0.822744 |
Target: 5'- gUCCcuuUGGGCGacgcGGCgGUGCACCAUGu -3' miRNA: 3'- -AGGu--GCCCGUcuu-CCG-CGCGUGGUAC- -5' |
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11098 | 5' | -59.1 | NC_002794.1 | + | 179430 | 0.73 | 0.418732 |
Target: 5'- gCCcCGGGCGcGGAGGCGUGgACCAc- -3' miRNA: 3'- aGGuGCCCGU-CUUCCGCGCgUGGUac -5' |
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11098 | 5' | -59.1 | NC_002794.1 | + | 183005 | 0.71 | 0.53716 |
Target: 5'- gCCGCGGGCGccccGCGCGCGCCc-- -3' miRNA: 3'- aGGUGCCCGUcuucCGCGCGUGGuac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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