miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11098 5' -59.1 NC_002794.1 + 194337 0.66 0.805886
Target:  5'- gCCACGGGCucuccgacGggGGCGCcaggaACCGc- -3'
miRNA:   3'- aGGUGCCCGu-------CuuCCGCGcg---UGGUac -5'
11098 5' -59.1 NC_002794.1 + 191487 0.67 0.760368
Target:  5'- gCCACGGGCGaucguccgccaccGAgAGGUGCcaGCGCCGg- -3'
miRNA:   3'- aGGUGCCCGU-------------CU-UCCGCG--CGUGGUac -5'
11098 5' -59.1 NC_002794.1 + 186760 0.67 0.779509
Target:  5'- aCCAgGGGCAGGccAGGCGCuccgacacguaGCGCgCGa- -3'
miRNA:   3'- aGGUgCCCGUCU--UCCGCG-----------CGUG-GUac -5'
11098 5' -59.1 NC_002794.1 + 186647 0.67 0.752016
Target:  5'- -gCGCGGGUcGGccGCGCGCACCc-- -3'
miRNA:   3'- agGUGCCCGuCUucCGCGCGUGGuac -5'
11098 5' -59.1 NC_002794.1 + 186483 0.68 0.742642
Target:  5'- cUCCuggaGGGCccGgcGGCGCGCcuccccGCCGUGg -3'
miRNA:   3'- -AGGug--CCCGu-CuuCCGCGCG------UGGUAC- -5'
11098 5' -59.1 NC_002794.1 + 185470 0.66 0.838952
Target:  5'- gCCGCGGGCGGc-GGC-CGCGgCGa- -3'
miRNA:   3'- aGGUGCCCGUCuuCCGcGCGUgGUac -5'
11098 5' -59.1 NC_002794.1 + 184465 0.7 0.585875
Target:  5'- cCCGCGGGCcgcgcGAAcGGCGCGCGgggcCCcgGa -3'
miRNA:   3'- aGGUGCCCGu----CUU-CCGCGCGU----GGuaC- -5'
11098 5' -59.1 NC_002794.1 + 184082 0.7 0.584891
Target:  5'- cCCACGguguagcGGCAGAAcGGCGaaCGCGCCAg- -3'
miRNA:   3'- aGGUGC-------CCGUCUU-CCGC--GCGUGGUac -5'
11098 5' -59.1 NC_002794.1 + 183005 0.71 0.53716
Target:  5'- gCCGCGGGCGccccGCGCGCGCCc-- -3'
miRNA:   3'- aGGUGCCCGUcuucCGCGCGUGGuac -5'
11098 5' -59.1 NC_002794.1 + 179430 0.73 0.418732
Target:  5'- gCCcCGGGCGcGGAGGCGUGgACCAc- -3'
miRNA:   3'- aGGuGCCCGU-CUUCCGCGCgUGGUac -5'
11098 5' -59.1 NC_002794.1 + 176542 0.66 0.822744
Target:  5'- gUCCcuuUGGGCGacgcGGCgGUGCACCAUGu -3'
miRNA:   3'- -AGGu--GCCCGUcuu-CCG-CGCGUGGUAC- -5'
11098 5' -59.1 NC_002794.1 + 158744 0.67 0.779509
Target:  5'- gCC-CGGGUAGu--GUGCGCGCaCGUGg -3'
miRNA:   3'- aGGuGCCCGUCuucCGCGCGUG-GUAC- -5'
11098 5' -59.1 NC_002794.1 + 152678 0.67 0.797232
Target:  5'- aUCGCGaGCuGggGGUGUGCGCCu-- -3'
miRNA:   3'- aGGUGCcCGuCuuCCGCGCGUGGuac -5'
11098 5' -59.1 NC_002794.1 + 147073 0.74 0.375173
Target:  5'- gCCGCGGGCGcccgguccaaggacGAAGGCGUcgGCGCCcgGc -3'
miRNA:   3'- aGGUGCCCGU--------------CUUCCGCG--CGUGGuaC- -5'
11098 5' -59.1 NC_002794.1 + 143532 0.69 0.644292
Target:  5'- cCCGCGucCAGGAGGCGCggcacgaGCACgGUGg -3'
miRNA:   3'- aGGUGCccGUCUUCCGCG-------CGUGgUAC- -5'
11098 5' -59.1 NC_002794.1 + 143072 0.66 0.814393
Target:  5'- cCCGCGgcGGCAGAcguaguggAGGuUGCGCGgCGUGu -3'
miRNA:   3'- aGGUGC--CCGUCU--------UCC-GCGCGUgGUAC- -5'
11098 5' -59.1 NC_002794.1 + 142396 0.67 0.752016
Target:  5'- aCgGCGGuGCAGgcGGCGUcggcgGCGCCGg- -3'
miRNA:   3'- aGgUGCC-CGUCuuCCGCG-----CGUGGUac -5'
11098 5' -59.1 NC_002794.1 + 141527 0.66 0.822744
Target:  5'- gCCuggGCGGGCugcucgccGAAGGCGCGaaucCGCCAc- -3'
miRNA:   3'- aGG---UGCCCGu-------CUUCCGCGC----GUGGUac -5'
11098 5' -59.1 NC_002794.1 + 141424 0.67 0.788436
Target:  5'- cUCGgGGGCGGcgGGGGCGCcggggGCGCCGg- -3'
miRNA:   3'- aGGUgCCCGUC--UUCCGCG-----CGUGGUac -5'
11098 5' -59.1 NC_002794.1 + 140905 0.74 0.38557
Target:  5'- aCCGCGuGGCGGGaccugcAGGCGCGCugCcUGc -3'
miRNA:   3'- aGGUGC-CCGUCU------UCCGCGCGugGuAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.