miRNA display CGI


Results 21 - 40 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11098 5' -59.1 NC_002794.1 + 140035 0.69 0.644292
Target:  5'- cCCGCGGGCGGcgggagacacggaAAGGgGCuCACCAc- -3'
miRNA:   3'- aGGUGCCCGUC-------------UUCCgCGcGUGGUac -5'
11098 5' -59.1 NC_002794.1 + 139491 0.66 0.814393
Target:  5'- --gAUGGGCGc-GGGCGCGCugCAg- -3'
miRNA:   3'- aggUGCCCGUcuUCCGCGCGugGUac -5'
11098 5' -59.1 NC_002794.1 + 138921 0.67 0.797232
Target:  5'- aCCGCGG-CGGAuggucugccGGUGCGCccccACCGUGg -3'
miRNA:   3'- aGGUGCCcGUCUu--------CCGCGCG----UGGUAC- -5'
11098 5' -59.1 NC_002794.1 + 137069 0.69 0.684785
Target:  5'- gUCgGCGGGCucuu--CGCGCGCCAUGu -3'
miRNA:   3'- -AGgUGCCCGucuuccGCGCGUGGUAC- -5'
11098 5' -59.1 NC_002794.1 + 122970 0.67 0.789322
Target:  5'- gCCugGGGUGGcuguacgcgcgccuGGUGCGgGCCGUGc -3'
miRNA:   3'- aGGugCCCGUCuu------------CCGCGCgUGGUAC- -5'
11098 5' -59.1 NC_002794.1 + 118248 0.67 0.797232
Target:  5'- gUCgGCGGGCuGGAGGUcggccggggcgGCgGCGCCGg- -3'
miRNA:   3'- -AGgUGCCCGuCUUCCG-----------CG-CGUGGUac -5'
11098 5' -59.1 NC_002794.1 + 117848 0.68 0.742642
Target:  5'- -gCACGGaGCGcgacGggGGCugGCGCGCCAg- -3'
miRNA:   3'- agGUGCC-CGU----CuuCCG--CGCGUGGUac -5'
11098 5' -59.1 NC_002794.1 + 117665 0.66 0.830933
Target:  5'- gCCACGcGCGGc-GGCGCGUACUg-- -3'
miRNA:   3'- aGGUGCcCGUCuuCCGCGCGUGGuac -5'
11098 5' -59.1 NC_002794.1 + 115049 0.67 0.770458
Target:  5'- -aC-CGGGCGGcGGGCGgcaGCGCCGUc -3'
miRNA:   3'- agGuGCCCGUCuUCCGCg--CGUGGUAc -5'
11098 5' -59.1 NC_002794.1 + 114265 0.72 0.499222
Target:  5'- cUCCGgGGGCGGGucGUGCuGCACCAg- -3'
miRNA:   3'- -AGGUgCCCGUCUucCGCG-CGUGGUac -5'
11098 5' -59.1 NC_002794.1 + 113172 0.66 0.822744
Target:  5'- -gCGCGGGCGGcggcggucgcgGAGGCGCcucCGCCGc- -3'
miRNA:   3'- agGUGCCCGUC-----------UUCCGCGc--GUGGUac -5'
11098 5' -59.1 NC_002794.1 + 112389 0.68 0.733177
Target:  5'- -aCGCaGGGCGGcgaucuuGGCGCGCugCAg- -3'
miRNA:   3'- agGUG-CCCGUCuu-----CCGCGCGugGUac -5'
11098 5' -59.1 NC_002794.1 + 111145 0.72 0.507659
Target:  5'- cUCCACGcgguagcgggucaGGCAGAcgcggugcaGGGCGCGCACgAa- -3'
miRNA:   3'- -AGGUGC-------------CCGUCU---------UCCGCGCGUGgUac -5'
11098 5' -59.1 NC_002794.1 + 107175 0.68 0.733177
Target:  5'- gCUACGcGGCGGAGccGGCGC-CGCCGc- -3'
miRNA:   3'- aGGUGC-CCGUCUU--CCGCGcGUGGUac -5'
11098 5' -59.1 NC_002794.1 + 107091 0.69 0.665084
Target:  5'- gCCgACGGGCGGggGuGUGuCGCugCGa- -3'
miRNA:   3'- aGG-UGCCCGUCuuC-CGC-GCGugGUac -5'
11098 5' -59.1 NC_002794.1 + 107048 0.71 0.556505
Target:  5'- cCCGCGucggaGGCGGcGGGCGCgGCGCCGc- -3'
miRNA:   3'- aGGUGC-----CCGUCuUCCGCG-CGUGGUac -5'
11098 5' -59.1 NC_002794.1 + 103409 0.67 0.752016
Target:  5'- aCCAcguCGGGCAGcgccGCGUGCACgAUGu -3'
miRNA:   3'- aGGU---GCCCGUCuuc-CGCGCGUGgUAC- -5'
11098 5' -59.1 NC_002794.1 + 102639 0.66 0.805886
Target:  5'- aUCCGCcGGCuGgcGGCGCGCucggaggagcuGCCGa- -3'
miRNA:   3'- -AGGUGcCCGuCuuCCGCGCG-----------UGGUac -5'
11098 5' -59.1 NC_002794.1 + 101587 0.67 0.788436
Target:  5'- gCCGCGGccgGGggGGCGgGUGCCGg- -3'
miRNA:   3'- aGGUGCCcg-UCuuCCGCgCGUGGUac -5'
11098 5' -59.1 NC_002794.1 + 101288 0.68 0.722671
Target:  5'- gCgGCGGGgAGGagacgacguaccaGGGCGC-CACCGUGu -3'
miRNA:   3'- aGgUGCCCgUCU-------------UCCGCGcGUGGUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.