Results 41 - 60 of 88 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11098 | 5' | -59.1 | NC_002794.1 | + | 101007 | 0.69 | 0.674951 |
Target: 5'- gCCGCGGGCcuuccugucGggGGaCGCGgGCCGg- -3' miRNA: 3'- aGGUGCCCGu--------CuuCC-GCGCgUGGUac -5' |
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11098 | 5' | -59.1 | NC_002794.1 | + | 99569 | 0.73 | 0.41028 |
Target: 5'- cUCCGCGGGCgaggggggugcGGAGGGCGCgGCGgCGg- -3' miRNA: 3'- -AGGUGCCCG-----------UCUUCCGCG-CGUgGUac -5' |
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11098 | 5' | -59.1 | NC_002794.1 | + | 98952 | 0.67 | 0.797232 |
Target: 5'- -gCugGGGCucgugcuGGGCGCcgucggcgGCGCCGUGg -3' miRNA: 3'- agGugCCCGucu----UCCGCG--------CGUGGUAC- -5' |
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11098 | 5' | -59.1 | NC_002794.1 | + | 97478 | 0.68 | 0.72363 |
Target: 5'- aUCCACGuGGCucuacaAGGAGaCGUGCAgCAUGa -3' miRNA: 3'- -AGGUGC-CCG------UCUUCcGCGCGUgGUAC- -5' |
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11098 | 5' | -59.1 | NC_002794.1 | + | 94411 | 0.67 | 0.770458 |
Target: 5'- aCCGCGGuGU--GGGGCGCGC-CCGa- -3' miRNA: 3'- aGGUGCC-CGucUUCCGCGCGuGGUac -5' |
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11098 | 5' | -59.1 | NC_002794.1 | + | 94283 | 0.66 | 0.805027 |
Target: 5'- -gCGCGGcccgaGCGGggGGCggcucggGCGCGCCGa- -3' miRNA: 3'- agGUGCC-----CGUCuuCCG-------CGCGUGGUac -5' |
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11098 | 5' | -59.1 | NC_002794.1 | + | 92968 | 0.66 | 0.838952 |
Target: 5'- cCCGCGcGGCGGcAAGGgGCuGC-CCGUc -3' miRNA: 3'- aGGUGC-CCGUC-UUCCgCG-CGuGGUAc -5' |
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11098 | 5' | -59.1 | NC_002794.1 | + | 91996 | 0.66 | 0.814393 |
Target: 5'- -aCACgGGGCAGAAcggcGGCaGCGCGCUc-- -3' miRNA: 3'- agGUG-CCCGUCUU----CCG-CGCGUGGuac -5' |
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11098 | 5' | -59.1 | NC_002794.1 | + | 91128 | 0.66 | 0.84211 |
Target: 5'- gCCguGCGuGG-AGGAGGCGCggacggugcugcuggGCGCCGUGg -3' miRNA: 3'- aGG--UGC-CCgUCUUCCGCG---------------CGUGGUAC- -5' |
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11098 | 5' | -59.1 | NC_002794.1 | + | 91043 | 0.72 | 0.471567 |
Target: 5'- cCCuCGGGguGGacgGGGCGCGCgucgucauguacGCCGUGg -3' miRNA: 3'- aGGuGCCCguCU---UCCGCGCG------------UGGUAC- -5' |
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11098 | 5' | -59.1 | NC_002794.1 | + | 89496 | 0.67 | 0.752016 |
Target: 5'- cUCCcgcgauGCGGGCAGGAGacCGCGUagGCCAg- -3' miRNA: 3'- -AGG------UGCCCGUCUUCc-GCGCG--UGGUac -5' |
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11098 | 5' | -59.1 | NC_002794.1 | + | 81232 | 0.66 | 0.814393 |
Target: 5'- cCCcCGGGCcGc--GCGCGCACCAc- -3' miRNA: 3'- aGGuGCCCGuCuucCGCGCGUGGUac -5' |
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11098 | 5' | -59.1 | NC_002794.1 | + | 80276 | 0.67 | 0.761291 |
Target: 5'- cUCaCACGGGUcaacgagcucguGGAGGGCGUcuucaGCcCCGUGg -3' miRNA: 3'- -AG-GUGCCCG------------UCUUCCGCG-----CGuGGUAC- -5' |
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11098 | 5' | -59.1 | NC_002794.1 | + | 76538 | 0.68 | 0.742642 |
Target: 5'- gCCGCGGcGCcGAcgcGGuCGCGCGCCGg- -3' miRNA: 3'- aGGUGCC-CGuCUu--CC-GCGCGUGGUac -5' |
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11098 | 5' | -59.1 | NC_002794.1 | + | 73056 | 0.7 | 0.576046 |
Target: 5'- aUCACGcugaacuucuGGCAGGAGGacggGCGCACCGUc -3' miRNA: 3'- aGGUGC----------CCGUCUUCCg---CGCGUGGUAc -5' |
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11098 | 5' | -59.1 | NC_002794.1 | + | 71229 | 0.66 | 0.805886 |
Target: 5'- gCCGCGuaguGGCGGccGGCGUGgACCGg- -3' miRNA: 3'- aGGUGC----CCGUCuuCCGCGCgUGGUac -5' |
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11098 | 5' | -59.1 | NC_002794.1 | + | 68940 | 0.67 | 0.761291 |
Target: 5'- cCCGCGGGCcgc-GGCGCcgGCGCCu-- -3' miRNA: 3'- aGGUGCCCGucuuCCGCG--CGUGGuac -5' |
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11098 | 5' | -59.1 | NC_002794.1 | + | 65228 | 0.66 | 0.805886 |
Target: 5'- uUCCACGGGCGGc-GGuCGcCGCGgCGg- -3' miRNA: 3'- -AGGUGCCCGUCuuCC-GC-GCGUgGUac -5' |
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11098 | 5' | -59.1 | NC_002794.1 | + | 62501 | 0.66 | 0.838952 |
Target: 5'- aCgGCGGGCGGcgccgccGGCGCcuccgccCACCGUGa -3' miRNA: 3'- aGgUGCCCGUCuu-----CCGCGc------GUGGUAC- -5' |
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11098 | 5' | -59.1 | NC_002794.1 | + | 60625 | 0.69 | 0.645284 |
Target: 5'- aCCggACGGGCGGAcccGGCGCcggcgGCGCCGg- -3' miRNA: 3'- aGG--UGCCCGUCUu--CCGCG-----CGUGGUac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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