miRNA display CGI


Results 41 - 60 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11098 5' -59.1 NC_002794.1 + 62501 0.66 0.838952
Target:  5'- aCgGCGGGCGGcgccgccGGCGCcuccgccCACCGUGa -3'
miRNA:   3'- aGgUGCCCGUCuu-----CCGCGc------GUGGUAC- -5'
11098 5' -59.1 NC_002794.1 + 8631 0.66 0.838952
Target:  5'- --aGCGcGGUGGAAGacGUGCGCGCCAa- -3'
miRNA:   3'- aggUGC-CCGUCUUC--CGCGCGUGGUac -5'
11098 5' -59.1 NC_002794.1 + 92968 0.66 0.838952
Target:  5'- cCCGCGcGGCGGcAAGGgGCuGC-CCGUc -3'
miRNA:   3'- aGGUGC-CCGUC-UUCCgCG-CGuGGUAc -5'
11098 5' -59.1 NC_002794.1 + 52165 0.66 0.838952
Target:  5'- aCCAgGcGGCGGc-GGUGCGCAUCGc- -3'
miRNA:   3'- aGGUgC-CCGUCuuCCGCGCGUGGUac -5'
11098 5' -59.1 NC_002794.1 + 91128 0.66 0.84211
Target:  5'- gCCguGCGuGG-AGGAGGCGCggacggugcugcuggGCGCCGUGg -3'
miRNA:   3'- aGG--UGC-CCgUCUUCCGCG---------------CGUGGUAC- -5'
11098 5' -59.1 NC_002794.1 + 143072 0.66 0.814393
Target:  5'- cCCGCGgcGGCAGAcguaguggAGGuUGCGCGgCGUGu -3'
miRNA:   3'- aGGUGC--CCGUCU--------UCC-GCGCGUgGUAC- -5'
11098 5' -59.1 NC_002794.1 + 139491 0.66 0.814393
Target:  5'- --gAUGGGCGc-GGGCGCGCugCAg- -3'
miRNA:   3'- aggUGCCCGUcuUCCGCGCGugGUac -5'
11098 5' -59.1 NC_002794.1 + 141424 0.67 0.788436
Target:  5'- cUCGgGGGCGGcgGGGGCGCcggggGCGCCGg- -3'
miRNA:   3'- aGGUgCCCGUC--UUCCGCG-----CGUGGUac -5'
11098 5' -59.1 NC_002794.1 + 122970 0.67 0.789322
Target:  5'- gCCugGGGUGGcuguacgcgcgccuGGUGCGgGCCGUGc -3'
miRNA:   3'- aGGugCCCGUCuu------------CCGCGCgUGGUAC- -5'
11098 5' -59.1 NC_002794.1 + 118248 0.67 0.797232
Target:  5'- gUCgGCGGGCuGGAGGUcggccggggcgGCgGCGCCGg- -3'
miRNA:   3'- -AGgUGCCCGuCUUCCG-----------CG-CGUGGUac -5'
11098 5' -59.1 NC_002794.1 + 152678 0.67 0.797232
Target:  5'- aUCGCGaGCuGggGGUGUGCGCCu-- -3'
miRNA:   3'- aGGUGCcCGuCuuCCGCGCGUGGuac -5'
11098 5' -59.1 NC_002794.1 + 94283 0.66 0.805027
Target:  5'- -gCGCGGcccgaGCGGggGGCggcucggGCGCGCCGa- -3'
miRNA:   3'- agGUGCC-----CGUCuuCCG-------CGCGUGGUac -5'
11098 5' -59.1 NC_002794.1 + 138921 0.67 0.797232
Target:  5'- aCCGCGG-CGGAuggucugccGGUGCGCccccACCGUGg -3'
miRNA:   3'- aGGUGCCcGUCUu--------CCGCGCG----UGGUAC- -5'
11098 5' -59.1 NC_002794.1 + 98952 0.67 0.797232
Target:  5'- -gCugGGGCucgugcuGGGCGCcgucggcgGCGCCGUGg -3'
miRNA:   3'- agGugCCCGucu----UCCGCG--------CGUGGUAC- -5'
11098 5' -59.1 NC_002794.1 + 65228 0.66 0.805886
Target:  5'- uUCCACGGGCGGc-GGuCGcCGCGgCGg- -3'
miRNA:   3'- -AGGUGCCCGUCuuCC-GC-GCGUgGUac -5'
11098 5' -59.1 NC_002794.1 + 194337 0.66 0.805886
Target:  5'- gCCACGGGCucuccgacGggGGCGCcaggaACCGc- -3'
miRNA:   3'- aGGUGCCCGu-------CuuCCGCGcg---UGGUac -5'
11098 5' -59.1 NC_002794.1 + 71229 0.66 0.805886
Target:  5'- gCCGCGuaguGGCGGccGGCGUGgACCGg- -3'
miRNA:   3'- aGGUGC----CCGUCuuCCGCGCgUGGUac -5'
11098 5' -59.1 NC_002794.1 + 102639 0.66 0.805886
Target:  5'- aUCCGCcGGCuGgcGGCGCGCucggaggagcuGCCGa- -3'
miRNA:   3'- -AGGUGcCCGuCuuCCGCGCG-----------UGGUac -5'
11098 5' -59.1 NC_002794.1 + 81232 0.66 0.814393
Target:  5'- cCCcCGGGCcGc--GCGCGCACCAc- -3'
miRNA:   3'- aGGuGCCCGuCuucCGCGCGUGGUac -5'
11098 5' -59.1 NC_002794.1 + 91996 0.66 0.814393
Target:  5'- -aCACgGGGCAGAAcggcGGCaGCGCGCUc-- -3'
miRNA:   3'- agGUG-CCCGUCUU----CCG-CGCGUGGuac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.