Results 61 - 80 of 88 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11098 | 5' | -59.1 | NC_002794.1 | + | 71229 | 0.66 | 0.805886 |
Target: 5'- gCCGCGuaguGGCGGccGGCGUGgACCGg- -3' miRNA: 3'- aGGUGC----CCGUCuuCCGCGCgUGGUac -5' |
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11098 | 5' | -59.1 | NC_002794.1 | + | 194337 | 0.66 | 0.805886 |
Target: 5'- gCCACGGGCucuccgacGggGGCGCcaggaACCGc- -3' miRNA: 3'- aGGUGCCCGu-------CuuCCGCGcg---UGGUac -5' |
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11098 | 5' | -59.1 | NC_002794.1 | + | 94411 | 0.67 | 0.770458 |
Target: 5'- aCCGCGGuGU--GGGGCGCGC-CCGa- -3' miRNA: 3'- aGGUGCC-CGucUUCCGCGCGuGGUac -5' |
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11098 | 5' | -59.1 | NC_002794.1 | + | 115049 | 0.67 | 0.770458 |
Target: 5'- -aC-CGGGCGGcGGGCGgcaGCGCCGUc -3' miRNA: 3'- agGuGCCCGUCuUCCGCg--CGUGGUAc -5' |
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11098 | 5' | -59.1 | NC_002794.1 | + | 186760 | 0.67 | 0.779509 |
Target: 5'- aCCAgGGGCAGGccAGGCGCuccgacacguaGCGCgCGa- -3' miRNA: 3'- aGGUgCCCGUCU--UCCGCG-----------CGUG-GUac -5' |
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11098 | 5' | -59.1 | NC_002794.1 | + | 56383 | 0.67 | 0.770458 |
Target: 5'- aUCCACcGGCAcGGauugcgagAGGCGCGCAUCc-- -3' miRNA: 3'- -AGGUGcCCGU-CU--------UCCGCGCGUGGuac -5' |
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11098 | 5' | -59.1 | NC_002794.1 | + | 191487 | 0.67 | 0.760368 |
Target: 5'- gCCACGGGCGaucguccgccaccGAgAGGUGCcaGCGCCGg- -3' miRNA: 3'- aGGUGCCCGU-------------CU-UCCGCG--CGUGGUac -5' |
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11098 | 5' | -59.1 | NC_002794.1 | + | 80276 | 0.67 | 0.761291 |
Target: 5'- cUCaCACGGGUcaacgagcucguGGAGGGCGUcuucaGCcCCGUGg -3' miRNA: 3'- -AG-GUGCCCG------------UCUUCCGCG-----CGuGGUAC- -5' |
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11098 | 5' | -59.1 | NC_002794.1 | + | 68940 | 0.67 | 0.761291 |
Target: 5'- cCCGCGGGCcgc-GGCGCcgGCGCCu-- -3' miRNA: 3'- aGGUGCCCGucuuCCGCG--CGUGGuac -5' |
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11098 | 5' | -59.1 | NC_002794.1 | + | 103409 | 0.67 | 0.752016 |
Target: 5'- aCCAcguCGGGCAGcgccGCGUGCACgAUGu -3' miRNA: 3'- aGGU---GCCCGUCuuc-CGCGCGUGgUAC- -5' |
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11098 | 5' | -59.1 | NC_002794.1 | + | 158744 | 0.67 | 0.779509 |
Target: 5'- gCC-CGGGUAGu--GUGCGCGCaCGUGg -3' miRNA: 3'- aGGuGCCCGUCuucCGCGCGUG-GUAC- -5' |
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11098 | 5' | -59.1 | NC_002794.1 | + | 101587 | 0.67 | 0.788436 |
Target: 5'- gCCGCGGccgGGggGGCGgGUGCCGg- -3' miRNA: 3'- aGGUGCCcg-UCuuCCGCgCGUGGUac -5' |
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11098 | 5' | -59.1 | NC_002794.1 | + | 65228 | 0.66 | 0.805886 |
Target: 5'- uUCCACGGGCGGc-GGuCGcCGCGgCGg- -3' miRNA: 3'- -AGGUGCCCGUCuuCC-GC-GCGUgGUac -5' |
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11098 | 5' | -59.1 | NC_002794.1 | + | 98952 | 0.67 | 0.797232 |
Target: 5'- -gCugGGGCucgugcuGGGCGCcgucggcgGCGCCGUGg -3' miRNA: 3'- agGugCCCGucu----UCCGCG--------CGUGGUAC- -5' |
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11098 | 5' | -59.1 | NC_002794.1 | + | 138921 | 0.67 | 0.797232 |
Target: 5'- aCCGCGG-CGGAuggucugccGGUGCGCccccACCGUGg -3' miRNA: 3'- aGGUGCCcGUCUu--------CCGCGCG----UGGUAC- -5' |
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11098 | 5' | -59.1 | NC_002794.1 | + | 94283 | 0.66 | 0.805027 |
Target: 5'- -gCGCGGcccgaGCGGggGGCggcucggGCGCGCCGa- -3' miRNA: 3'- agGUGCC-----CGUCuuCCG-------CGCGUGGUac -5' |
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11098 | 5' | -59.1 | NC_002794.1 | + | 152678 | 0.67 | 0.797232 |
Target: 5'- aUCGCGaGCuGggGGUGUGCGCCu-- -3' miRNA: 3'- aGGUGCcCGuCuuCCGCGCGUGGuac -5' |
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11098 | 5' | -59.1 | NC_002794.1 | + | 118248 | 0.67 | 0.797232 |
Target: 5'- gUCgGCGGGCuGGAGGUcggccggggcgGCgGCGCCGg- -3' miRNA: 3'- -AGgUGCCCGuCUUCCG-----------CG-CGUGGUac -5' |
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11098 | 5' | -59.1 | NC_002794.1 | + | 122970 | 0.67 | 0.789322 |
Target: 5'- gCCugGGGUGGcuguacgcgcgccuGGUGCGgGCCGUGc -3' miRNA: 3'- aGGugCCCGUCuu------------CCGCGCgUGGUAC- -5' |
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11098 | 5' | -59.1 | NC_002794.1 | + | 141424 | 0.67 | 0.788436 |
Target: 5'- cUCGgGGGCGGcgGGGGCGCcggggGCGCCGg- -3' miRNA: 3'- aGGUgCCCGUC--UUCCGCG-----CGUGGUac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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