miRNA display CGI


Results 1 - 20 of 442 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11099 3' -64.3 NC_002794.1 + 146327 0.66 0.669502
Target:  5'- cGCgCGGCGGauUCGaccCCGUCGUCGaUCGCg -3'
miRNA:   3'- -CGgGCCGCUc-AGC---GGCGGCAGC-GGCG- -5'
11099 3' -64.3 NC_002794.1 + 28711 0.66 0.669502
Target:  5'- -gCUGcCGucGUCGCCGCCGUcCGaCCGUg -3'
miRNA:   3'- cgGGCcGCu-CAGCGGCGGCA-GC-GGCG- -5'
11099 3' -64.3 NC_002794.1 + 53792 0.66 0.669502
Target:  5'- cGCCCGGCGGGUUuCuCGgCGggaGCCucgGCg -3'
miRNA:   3'- -CGGGCCGCUCAGcG-GCgGCag-CGG---CG- -5'
11099 3' -64.3 NC_002794.1 + 84070 0.66 0.669502
Target:  5'- -gCCGGaGAcGaCGaCCGCCG-CGCCGCc -3'
miRNA:   3'- cgGGCCgCU-CaGC-GGCGGCaGCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 127995 0.66 0.669502
Target:  5'- uGUCUgGGCG-GaCGaCCGUCGUCGgCCGCc -3'
miRNA:   3'- -CGGG-CCGCuCaGC-GGCGGCAGC-GGCG- -5'
11099 3' -64.3 NC_002794.1 + 107060 0.66 0.669502
Target:  5'- --gCGGCGGGcgcggCGCCGCCGgcaUGUCGg -3'
miRNA:   3'- cggGCCGCUCa----GCGGCGGCa--GCGGCg -5'
11099 3' -64.3 NC_002794.1 + 47961 0.66 0.669502
Target:  5'- gGCgCCGGCuGGG-CGaCCGCCG-CG-CGCu -3'
miRNA:   3'- -CG-GGCCG-CUCaGC-GGCGGCaGCgGCG- -5'
11099 3' -64.3 NC_002794.1 + 53108 0.66 0.669502
Target:  5'- cCCCGGCG-GUUccggaGCuCG-CGUCGaCCGCg -3'
miRNA:   3'- cGGGCCGCuCAG-----CG-GCgGCAGC-GGCG- -5'
11099 3' -64.3 NC_002794.1 + 12029 0.66 0.662963
Target:  5'- gGCCCgGGCGuccgCGCCuuccccuGCCGguaucucugggccgCGCCGCc -3'
miRNA:   3'- -CGGG-CCGCuca-GCGG-------CGGCa-------------GCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 14782 0.66 0.660157
Target:  5'- aGgCCGGCGAG--GCCGgCGUgaCCGCg -3'
miRNA:   3'- -CgGGCCGCUCagCGGCgGCAgcGGCG- -5'
11099 3' -64.3 NC_002794.1 + 80025 0.66 0.660157
Target:  5'- aGgCCGGgGAGaccacUCGCCgacaguGCCGgcgcgaGCCGCg -3'
miRNA:   3'- -CgGGCCgCUC-----AGCGG------CGGCag----CGGCG- -5'
11099 3' -64.3 NC_002794.1 + 37536 0.66 0.660157
Target:  5'- cGgCUGGCGAacaGCCGCCGgaggggccaCGaCCGCg -3'
miRNA:   3'- -CgGGCCGCUcagCGGCGGCa--------GC-GGCG- -5'
11099 3' -64.3 NC_002794.1 + 32705 0.66 0.660157
Target:  5'- -gCgGGCGAcUCGCCGCCacccGUCGgCGg -3'
miRNA:   3'- cgGgCCGCUcAGCGGCGG----CAGCgGCg -5'
11099 3' -64.3 NC_002794.1 + 44105 0.66 0.660157
Target:  5'- uGCgCCGaCGAG-CGCCGCaucaGcUCGCgGCa -3'
miRNA:   3'- -CG-GGCcGCUCaGCGGCGg---C-AGCGgCG- -5'
11099 3' -64.3 NC_002794.1 + 32652 0.66 0.660157
Target:  5'- -aCCggGGCGAcggCGCCGuccCCGUCGuCCGCc -3'
miRNA:   3'- cgGG--CCGCUca-GCGGC---GGCAGC-GGCG- -5'
11099 3' -64.3 NC_002794.1 + 14145 0.66 0.660157
Target:  5'- cGUCCGGUccGUCGUCgaGCCc-CGCCGCc -3'
miRNA:   3'- -CGGGCCGcuCAGCGG--CGGcaGCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 153394 0.66 0.660157
Target:  5'- uGUCCGaucGCGAGcUGUCGCgagCGCCGCg -3'
miRNA:   3'- -CGGGC---CGCUCaGCGGCGgcaGCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 101245 0.66 0.660157
Target:  5'- cGCuCCGGCGcgcagcggggGGcCGCCcCCGgCGCCGg -3'
miRNA:   3'- -CG-GGCCGC----------UCaGCGGcGGCaGCGGCg -5'
11099 3' -64.3 NC_002794.1 + 183505 0.66 0.656413
Target:  5'- aCCCGGCcccgagacccauGUCGCgGCCGU-GCgCGCc -3'
miRNA:   3'- cGGGCCGcu----------CAGCGgCGGCAgCG-GCG- -5'
11099 3' -64.3 NC_002794.1 + 128171 0.66 0.650793
Target:  5'- cGCCgCGGaCGGGUCGgUGaccuCGUCgGUCGCg -3'
miRNA:   3'- -CGG-GCC-GCUCAGCgGCg---GCAG-CGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.