miRNA display CGI


Results 41 - 60 of 442 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11099 3' -64.3 NC_002794.1 + 47961 0.66 0.669502
Target:  5'- gGCgCCGGCuGGG-CGaCCGCCG-CG-CGCu -3'
miRNA:   3'- -CG-GGCCG-CUCaGC-GGCGGCaGCgGCG- -5'
11099 3' -64.3 NC_002794.1 + 53108 0.66 0.669502
Target:  5'- cCCCGGCG-GUUccggaGCuCG-CGUCGaCCGCg -3'
miRNA:   3'- cGGGCCGCuCAG-----CG-GCgGCAGC-GGCG- -5'
11099 3' -64.3 NC_002794.1 + 146327 0.66 0.669502
Target:  5'- cGCgCGGCGGauUCGaccCCGUCGUCGaUCGCg -3'
miRNA:   3'- -CGgGCCGCUc-AGC---GGCGGCAGC-GGCG- -5'
11099 3' -64.3 NC_002794.1 + 44105 0.66 0.660157
Target:  5'- uGCgCCGaCGAG-CGCCGCaucaGcUCGCgGCa -3'
miRNA:   3'- -CG-GGCcGCUCaGCGGCGg---C-AGCGgCG- -5'
11099 3' -64.3 NC_002794.1 + 32705 0.66 0.660157
Target:  5'- -gCgGGCGAcUCGCCGCCacccGUCGgCGg -3'
miRNA:   3'- cgGgCCGCUcAGCGGCGG----CAGCgGCg -5'
11099 3' -64.3 NC_002794.1 + 181750 0.66 0.641416
Target:  5'- cGgCCGGCcAGccCGCugaCGCCGauggCGCCGCg -3'
miRNA:   3'- -CgGGCCGcUCa-GCG---GCGGCa---GCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 187833 0.66 0.647981
Target:  5'- cGCUCGGCucGgcgCGCCgagggcucugcccaGCCGcgcgcggcUCGCCGCu -3'
miRNA:   3'- -CGGGCCGcuCa--GCGG--------------CGGC--------AGCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 121875 0.66 0.647981
Target:  5'- uGCCaCGGCGAGUUGgggugggugcgguaCUGCgucgacuggaCGUCGcCCGCc -3'
miRNA:   3'- -CGG-GCCGCUCAGC--------------GGCG----------GCAGC-GGCG- -5'
11099 3' -64.3 NC_002794.1 + 38177 0.66 0.647981
Target:  5'- cGCUCGGCGAcgaaggcguuccugGUC-UCGUCGuUCGCgCGCg -3'
miRNA:   3'- -CGGGCCGCU--------------CAGcGGCGGC-AGCG-GCG- -5'
11099 3' -64.3 NC_002794.1 + 99805 0.66 0.650793
Target:  5'- cGCgCC-GCGGG-CGCCggcGCCGUCgGCCGa -3'
miRNA:   3'- -CG-GGcCGCUCaGCGG---CGGCAG-CGGCg -5'
11099 3' -64.3 NC_002794.1 + 116916 0.66 0.650793
Target:  5'- gGUCCGGCGucggcuccggcGUCGUCGgCGUCcCCGg -3'
miRNA:   3'- -CGGGCCGCu----------CAGCGGCgGCAGcGGCg -5'
11099 3' -64.3 NC_002794.1 + 115185 0.66 0.650793
Target:  5'- gGCCCGGUGccggcGGUCgaGCCGgCGUagCGCCu- -3'
miRNA:   3'- -CGGGCCGC-----UCAG--CGGCgGCA--GCGGcg -5'
11099 3' -64.3 NC_002794.1 + 128171 0.66 0.650793
Target:  5'- cGCCgCGGaCGGGUCGgUGaccuCGUCgGUCGCg -3'
miRNA:   3'- -CGG-GCC-GCUCAGCgGCg---GCAG-CGGCG- -5'
11099 3' -64.3 NC_002794.1 + 124487 0.66 0.650793
Target:  5'- cGCCCGGaccgccggaugGAGUCG-CGUCG--GCCGCg -3'
miRNA:   3'- -CGGGCCg----------CUCAGCgGCGGCagCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 183505 0.66 0.656413
Target:  5'- aCCCGGCcccgagacccauGUCGCgGCCGU-GCgCGCc -3'
miRNA:   3'- cGGGCCGcu----------CAGCGgCGGCAgCG-GCG- -5'
11099 3' -64.3 NC_002794.1 + 14782 0.66 0.660157
Target:  5'- aGgCCGGCGAG--GCCGgCGUgaCCGCg -3'
miRNA:   3'- -CgGGCCGCUCagCGGCgGCAgcGGCG- -5'
11099 3' -64.3 NC_002794.1 + 80025 0.66 0.660157
Target:  5'- aGgCCGGgGAGaccacUCGCCgacaguGCCGgcgcgaGCCGCg -3'
miRNA:   3'- -CgGGCCgCUC-----AGCGG------CGGCag----CGGCG- -5'
11099 3' -64.3 NC_002794.1 + 37536 0.66 0.660157
Target:  5'- cGgCUGGCGAacaGCCGCCGgaggggccaCGaCCGCg -3'
miRNA:   3'- -CgGGCCGCUcagCGGCGGCa--------GC-GGCG- -5'
11099 3' -64.3 NC_002794.1 + 73926 0.67 0.613273
Target:  5'- aCCUGGCucucGUCGCCGCCGaacgcuuccUgGCCaGCu -3'
miRNA:   3'- cGGGCCGcu--CAGCGGCGGC---------AgCGG-CG- -5'
11099 3' -64.3 NC_002794.1 + 64812 0.67 0.613273
Target:  5'- cGCCgcggacggCGGCGAGcCGgCGCCGaCGaCCGg -3'
miRNA:   3'- -CGG--------GCCGCUCaGCgGCGGCaGC-GGCg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.