Results 61 - 80 of 442 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
11099 | 3' | -64.3 | NC_002794.1 | + | 191193 | 0.67 | 0.603909 |
Target: 5'- cGCCCGGCcgccCGcCCGCuCGcUCGCuCGCu -3' miRNA: 3'- -CGGGCCGcucaGC-GGCG-GC-AGCG-GCG- -5' |
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11099 | 3' | -64.3 | NC_002794.1 | + | 31407 | 0.67 | 0.603909 |
Target: 5'- cGCCCGccGCGcc-CGCCGCCuUCGUCGa -3' miRNA: 3'- -CGGGC--CGCucaGCGGCGGcAGCGGCg -5' |
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11099 | 3' | -64.3 | NC_002794.1 | + | 51361 | 0.67 | 0.603909 |
Target: 5'- cGCCCgaGGCG-GcCGCC-CCGUCcgGCCGg -3' miRNA: 3'- -CGGG--CCGCuCaGCGGcGGCAG--CGGCg -5' |
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11099 | 3' | -64.3 | NC_002794.1 | + | 193804 | 0.67 | 0.603909 |
Target: 5'- -gCCGGCGcccgcucgucuGG-CGCCGaCgCGUCGCgGCg -3' miRNA: 3'- cgGGCCGC-----------UCaGCGGC-G-GCAGCGgCG- -5' |
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11099 | 3' | -64.3 | NC_002794.1 | + | 188341 | 0.67 | 0.603909 |
Target: 5'- -gCCGGCG-G-CGCCGUCG-CGcCCGUc -3' miRNA: 3'- cgGGCCGCuCaGCGGCGGCaGC-GGCG- -5' |
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11099 | 3' | -64.3 | NC_002794.1 | + | 180881 | 0.67 | 0.603909 |
Target: 5'- aUCCGGCGcgcccGGUCucgGCCGCgGacUCGgCCGCg -3' miRNA: 3'- cGGGCCGC-----UCAG---CGGCGgC--AGC-GGCG- -5' |
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11099 | 3' | -64.3 | NC_002794.1 | + | 185056 | 0.67 | 0.603909 |
Target: 5'- aGCgUGGUcugcAGcCGCCGCggccCGUCGCCGUa -3' miRNA: 3'- -CGgGCCGc---UCaGCGGCG----GCAGCGGCG- -5' |
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11099 | 3' | -64.3 | NC_002794.1 | + | 154311 | 0.67 | 0.603909 |
Target: 5'- aGCCuccucgggagagCGGCGucGGUCGUC-CCGggUGCCGCg -3' miRNA: 3'- -CGG------------GCCGC--UCAGCGGcGGCa-GCGGCG- -5' |
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11099 | 3' | -64.3 | NC_002794.1 | + | 75655 | 0.67 | 0.613273 |
Target: 5'- --gCGGC-AG-CGgCGCCGUCcGCCGCu -3' miRNA: 3'- cggGCCGcUCaGCgGCGGCAG-CGGCG- -5' |
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11099 | 3' | -64.3 | NC_002794.1 | + | 42261 | 0.67 | 0.613273 |
Target: 5'- aGCCCGcucCGcccUCGCC-CCGcCGCCGCu -3' miRNA: 3'- -CGGGCc--GCuc-AGCGGcGGCaGCGGCG- -5' |
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11099 | 3' | -64.3 | NC_002794.1 | + | 73926 | 0.67 | 0.613273 |
Target: 5'- aCCUGGCucucGUCGCCGCCGaacgcuuccUgGCCaGCu -3' miRNA: 3'- cGGGCCGcu--CAGCGGCGGC---------AgCGG-CG- -5' |
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11099 | 3' | -64.3 | NC_002794.1 | + | 64812 | 0.67 | 0.613273 |
Target: 5'- cGCCgcggacggCGGCGAGcCGgCGCCGaCGaCCGg -3' miRNA: 3'- -CGG--------GCCGCUCaGCgGCGGCaGC-GGCg -5' |
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11099 | 3' | -64.3 | NC_002794.1 | + | 34780 | 0.67 | 0.613273 |
Target: 5'- cGCCCGcGCcagccGAGUCgGCCGaaCCGgcccggGCCGCg -3' miRNA: 3'- -CGGGC-CG-----CUCAG-CGGC--GGCag----CGGCG- -5' |
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11099 | 3' | -64.3 | NC_002794.1 | + | 65183 | 0.67 | 0.613273 |
Target: 5'- -aCCGGCGGGU-GCCGgCGagGUCGg -3' miRNA: 3'- cgGGCCGCUCAgCGGCgGCagCGGCg -5' |
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11099 | 3' | -64.3 | NC_002794.1 | + | 25544 | 0.67 | 0.613273 |
Target: 5'- -gCCGGCcAGUCucaGCCGCCGUUcaccuucuCCGCu -3' miRNA: 3'- cgGGCCGcUCAG---CGGCGGCAGc-------GGCG- -5' |
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11099 | 3' | -64.3 | NC_002794.1 | + | 58832 | 0.67 | 0.613273 |
Target: 5'- cGCCUGccgcGCGAGgaCGCCGacgugcagcUCGUCGCCGa -3' miRNA: 3'- -CGGGC----CGCUCa-GCGGC---------GGCAGCGGCg -5' |
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11099 | 3' | -64.3 | NC_002794.1 | + | 14593 | 0.67 | 0.613273 |
Target: 5'- gGCCgUGGCGAG-CG-CGCCGggCaCCGCg -3' miRNA: 3'- -CGG-GCCGCUCaGCgGCGGCa-GcGGCG- -5' |
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11099 | 3' | -64.3 | NC_002794.1 | + | 146557 | 0.67 | 0.613273 |
Target: 5'- aGCUCGGCGGG-C-CCGaguuCCGagucCGCCGCg -3' miRNA: 3'- -CGGGCCGCUCaGcGGC----GGCa---GCGGCG- -5' |
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11099 | 3' | -64.3 | NC_002794.1 | + | 146262 | 0.67 | 0.613273 |
Target: 5'- cCUCGuCGucGUCGUCGUCGUCGUCGUc -3' miRNA: 3'- cGGGCcGCu-CAGCGGCGGCAGCGGCG- -5' |
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11099 | 3' | -64.3 | NC_002794.1 | + | 141526 | 0.67 | 0.603909 |
Target: 5'- cGCCUgGGCGGGcUGCuCGCCGaaGgCGCg -3' miRNA: 3'- -CGGG-CCGCUCaGCG-GCGGCagCgGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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