miRNA display CGI


Results 1 - 20 of 442 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11099 3' -64.3 NC_002794.1 + 186092 0.89 0.024447
Target:  5'- cGCCgGGCGcuUCGUCGCCGUCGCCGCc -3'
miRNA:   3'- -CGGgCCGCucAGCGGCGGCAGCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 13138 0.87 0.032236
Target:  5'- cGCUCGcGCGGGUCGUCGCCGUCccauGCCGCa -3'
miRNA:   3'- -CGGGC-CGCUCAGCGGCGGCAG----CGGCG- -5'
11099 3' -64.3 NC_002794.1 + 49441 0.87 0.030658
Target:  5'- cGUCCGGCGcGGUCGUCGCCGUggCGCCGCc -3'
miRNA:   3'- -CGGGCCGC-UCAGCGGCGGCA--GCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 66828 0.86 0.037373
Target:  5'- cGCCCGGCGcgacuccGGgCGCCGCCGUCGgCGCg -3'
miRNA:   3'- -CGGGCCGC-------UCaGCGGCGGCAGCgGCG- -5'
11099 3' -64.3 NC_002794.1 + 12166 0.86 0.038416
Target:  5'- cGCCCGGaucGUCGCCGCCGaCGCCGCc -3'
miRNA:   3'- -CGGGCCgcuCAGCGGCGGCaGCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 32276 0.85 0.046905
Target:  5'- gGCCgauCGGCGAGcgaCGCCGCCGcCGCCGCg -3'
miRNA:   3'- -CGG---GCCGCUCa--GCGGCGGCaGCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 66959 0.85 0.044625
Target:  5'- aGgCCGGCGAGUCGCuCGCCGggggagCGUCGCg -3'
miRNA:   3'- -CgGGCCGCUCAGCG-GCGGCa-----GCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 107259 0.84 0.049299
Target:  5'- gGCCCGGCGGagccgcgccGUcCGCCGCCGUCGCCcCg -3'
miRNA:   3'- -CGGGCCGCU---------CA-GCGGCGGCAGCGGcG- -5'
11099 3' -64.3 NC_002794.1 + 82913 0.83 0.060117
Target:  5'- cGCCUcGCGGcccCGCCGCCGUCGCCGCu -3'
miRNA:   3'- -CGGGcCGCUca-GCGGCGGCAGCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 44523 0.83 0.063162
Target:  5'- gGCCCGuguccGCGAGcgCGCCGUCGUCGUCGCc -3'
miRNA:   3'- -CGGGC-----CGCUCa-GCGGCGGCAGCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 11790 0.82 0.075036
Target:  5'- cGCCgCGGUGuccGUggcgccgcCGCCGCCGUCGCCGCc -3'
miRNA:   3'- -CGG-GCCGCu--CA--------GCGGCGGCAGCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 52901 0.81 0.084798
Target:  5'- aCgCGGCGc--CGCCGCCGUCGCCGCc -3'
miRNA:   3'- cGgGCCGCucaGCGGCGGCAGCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 118298 0.81 0.091225
Target:  5'- cGCCgGGCGcGUCGCuCGUCGUCGUCGUc -3'
miRNA:   3'- -CGGgCCGCuCAGCG-GCGGCAGCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 106261 0.81 0.080756
Target:  5'- -aCCGGCGAG-CGCCGCgCGUCgcGCCGCc -3'
miRNA:   3'- cgGGCCGCUCaGCGGCG-GCAG--CGGCG- -5'
11099 3' -64.3 NC_002794.1 + 46314 0.81 0.078804
Target:  5'- aGCgCGGCGGcGaCGgCGCCGUCGCCGCg -3'
miRNA:   3'- -CGgGCCGCU-CaGCgGCGGCAGCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 29208 0.81 0.082753
Target:  5'- cGUCCGGCG-GUCgGCgGCCGUCGgCCGCc -3'
miRNA:   3'- -CGGGCCGCuCAG-CGgCGGCAGC-GGCG- -5'
11099 3' -64.3 NC_002794.1 + 143720 0.81 0.091225
Target:  5'- cCCCGGCGGGcgucguccUCGcCCGCCGgacgCGCCGCc -3'
miRNA:   3'- cGGGCCGCUC--------AGC-GGCGGCa---GCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 17627 0.81 0.084798
Target:  5'- cGCCgCGGCGAGcgauccCGCCGCCGcggcCGCCGCc -3'
miRNA:   3'- -CGG-GCCGCUCa-----GCGGCGGCa---GCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 149220 0.81 0.082753
Target:  5'- gGCCgGaaGCGAGgcgcCGCCGCCGUCGCCGg -3'
miRNA:   3'- -CGGgC--CGCUCa---GCGGCGGCAGCGGCg -5'
11099 3' -64.3 NC_002794.1 + 55009 0.81 0.086891
Target:  5'- cGCCgGGCGuc-CGCCGCCG-CGCCGCc -3'
miRNA:   3'- -CGGgCCGCucaGCGGCGGCaGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.