Results 41 - 60 of 442 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11099 | 3' | -64.3 | NC_002794.1 | + | 137548 | 0.77 | 0.158016 |
Target: 5'- uUCgGGCGcgaAGaacgucgCGCCGCCGUCGCCGCc -3' miRNA: 3'- cGGgCCGC---UCa------GCGGCGGCAGCGGCG- -5' |
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11099 | 3' | -64.3 | NC_002794.1 | + | 116225 | 0.77 | 0.165561 |
Target: 5'- cGCgCGGCucGAGUCGaugcCCGCCGUgCGCCGUa -3' miRNA: 3'- -CGgGCCG--CUCAGC----GGCGGCA-GCGGCG- -5' |
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11099 | 3' | -64.3 | NC_002794.1 | + | 193288 | 0.77 | 0.165561 |
Target: 5'- uGCgCCGGU-AGUCGCCGuCCGcuccgCGCCGCa -3' miRNA: 3'- -CG-GGCCGcUCAGCGGC-GGCa----GCGGCG- -5' |
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11099 | 3' | -64.3 | NC_002794.1 | + | 71785 | 0.77 | 0.165561 |
Target: 5'- cGCgCGGCGAGUCGCCccCCGgcgggCGCgGCg -3' miRNA: 3'- -CGgGCCGCUCAGCGGc-GGCa----GCGgCG- -5' |
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11099 | 3' | -64.3 | NC_002794.1 | + | 188308 | 0.77 | 0.165561 |
Target: 5'- aCCCGGCccGUCGUCGUcguccuCGUCGCCGCc -3' miRNA: 3'- cGGGCCGcuCAGCGGCG------GCAGCGGCG- -5' |
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11099 | 3' | -64.3 | NC_002794.1 | + | 57998 | 0.77 | 0.150782 |
Target: 5'- cGCCaGGCcuucGUCGCCGCCGgggcCGCCGCc -3' miRNA: 3'- -CGGgCCGcu--CAGCGGCGGCa---GCGGCG- -5' |
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11099 | 3' | -64.3 | NC_002794.1 | + | 123264 | 0.76 | 0.190169 |
Target: 5'- -gCCGGCuGGUCcggGCCGCgGUCGUCGCg -3' miRNA: 3'- cgGGCCGcUCAG---CGGCGgCAGCGGCG- -5' |
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11099 | 3' | -64.3 | NC_002794.1 | + | 63930 | 0.76 | 0.19457 |
Target: 5'- cGCCCGGCcggcgagucucGAGUCcgaCGCC-UCGCCGCg -3' miRNA: 3'- -CGGGCCG-----------CUCAGcg-GCGGcAGCGGCG- -5' |
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11099 | 3' | -64.3 | NC_002794.1 | + | 82672 | 0.76 | 0.181628 |
Target: 5'- cGCgCCGGCGGaUCGCaCGCCGuUCGCCcgGCg -3' miRNA: 3'- -CG-GGCCGCUcAGCG-GCGGC-AGCGG--CG- -5' |
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11099 | 3' | -64.3 | NC_002794.1 | + | 11985 | 0.76 | 0.173028 |
Target: 5'- cGUCCGGCGgcuGGUUGCUGCUGUguggacugaugugCGCCGCc -3' miRNA: 3'- -CGGGCCGC---UCAGCGGCGGCA-------------GCGGCG- -5' |
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11099 | 3' | -64.3 | NC_002794.1 | + | 185219 | 0.76 | 0.19457 |
Target: 5'- cGCCgCGGaGAGUCG-CGCCGacCGCCGCg -3' miRNA: 3'- -CGG-GCCgCUCAGCgGCGGCa-GCGGCG- -5' |
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11099 | 3' | -64.3 | NC_002794.1 | + | 16539 | 0.76 | 0.185855 |
Target: 5'- cCCCGGCGuccccggcGUCGCCaccgccaccGCCGcCGCCGCc -3' miRNA: 3'- cGGGCCGCu-------CAGCGG---------CGGCaGCGGCG- -5' |
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11099 | 3' | -64.3 | NC_002794.1 | + | 192313 | 0.76 | 0.181628 |
Target: 5'- cGUCCGcGC---UCGCCGCCGcCGCCGCu -3' miRNA: 3'- -CGGGC-CGcucAGCGGCGGCaGCGGCG- -5' |
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11099 | 3' | -64.3 | NC_002794.1 | + | 24081 | 0.76 | 0.169454 |
Target: 5'- cGCCCgGGCGGG-CGUCGCCGUauuaaaGaCCGCg -3' miRNA: 3'- -CGGG-CCGCUCaGCGGCGGCAg-----C-GGCG- -5' |
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11099 | 3' | -64.3 | NC_002794.1 | + | 137592 | 0.75 | 0.217932 |
Target: 5'- aGUgCGGgGAGcCGCCGCCGgcggUCGCgGCg -3' miRNA: 3'- -CGgGCCgCUCaGCGGCGGC----AGCGgCG- -5' |
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11099 | 3' | -64.3 | NC_002794.1 | + | 118180 | 0.75 | 0.202257 |
Target: 5'- --gCGGCGAcgcgccgaccuuccGUCGCCGCCGcCGUCGCc -3' miRNA: 3'- cggGCCGCU--------------CAGCGGCGGCaGCGGCG- -5' |
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11099 | 3' | -64.3 | NC_002794.1 | + | 47390 | 0.75 | 0.222883 |
Target: 5'- aGCCCGaGCccGAGcccgaaGCCGCCGUCGgCGCc -3' miRNA: 3'- -CGGGC-CG--CUCag----CGGCGGCAGCgGCG- -5' |
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11099 | 3' | -64.3 | NC_002794.1 | + | 186359 | 0.75 | 0.208312 |
Target: 5'- uGCCCGaCcAGcCGCCGCCGcCGCCGUc -3' miRNA: 3'- -CGGGCcGcUCaGCGGCGGCaGCGGCG- -5' |
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11099 | 3' | -64.3 | NC_002794.1 | + | 128847 | 0.75 | 0.213075 |
Target: 5'- aGCgCCGGCGucgacGaCGCCGCUGcCGCCGUg -3' miRNA: 3'- -CG-GGCCGCu----CaGCGGCGGCaGCGGCG- -5' |
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11099 | 3' | -64.3 | NC_002794.1 | + | 49478 | 0.75 | 0.213075 |
Target: 5'- gGCCgCcGCGGGucugucgaccUCGUCGCCGUCGUCGCu -3' miRNA: 3'- -CGG-GcCGCUC----------AGCGGCGGCAGCGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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