miRNA display CGI


Results 21 - 40 of 442 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11099 3' -64.3 NC_002794.1 + 118298 0.81 0.091225
Target:  5'- cGCCgGGCGcGUCGCuCGUCGUCGUCGUc -3'
miRNA:   3'- -CGGgCCGCuCAGCG-GCGGCAGCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 151581 0.8 0.100515
Target:  5'- cCCCGGCG-G-CGCgCGCCGcCGCCGCg -3'
miRNA:   3'- cGGGCCGCuCaGCG-GCGGCaGCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 53900 0.8 0.105234
Target:  5'- cUCCGGCGGcguccucGUCGCCGUCGgcggCGCCGCc -3'
miRNA:   3'- cGGGCCGCU-------CAGCGGCGGCa---GCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 190643 0.79 0.107283
Target:  5'- aGCCCGGCGuGUgcaggaucacgucgCGcCCGCCG-CGCCGCc -3'
miRNA:   3'- -CGGGCCGCuCA--------------GC-GGCGGCaGCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 111102 0.79 0.108061
Target:  5'- gGCCCGGCGGGacCGUgGCCGUCGaCgGCg -3'
miRNA:   3'- -CGGGCCGCUCa-GCGgCGGCAGC-GgCG- -5'
11099 3' -64.3 NC_002794.1 + 111615 0.79 0.108061
Target:  5'- aGgCCGGCGGGgccgccgcggcCGCCGCCGgucgggCGCCGCg -3'
miRNA:   3'- -CgGGCCGCUCa----------GCGGCGGCa-----GCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 129000 0.79 0.115304
Target:  5'- aGCUCGGCGGucgacccgcucaccGUCGCCGCCGUCuCgGCg -3'
miRNA:   3'- -CGGGCCGCU--------------CAGCGGCGGCAGcGgCG- -5'
11099 3' -64.3 NC_002794.1 + 77941 0.79 0.116136
Target:  5'- cGCCggaGGCGccgcgaUCGCCGCCGUCGCCGa -3'
miRNA:   3'- -CGGg--CCGCuc----AGCGGCGGCAGCGGCg -5'
11099 3' -64.3 NC_002794.1 + 38519 0.79 0.116136
Target:  5'- cGCCuCcGCGAucccagGUCGCCGCCGcCGCCGCc -3'
miRNA:   3'- -CGG-GcCGCU------CAGCGGCGGCaGCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 107158 0.79 0.118951
Target:  5'- cCCCGGCGAGg-GCCGCCGcuaCGCgGCg -3'
miRNA:   3'- cGGGCCGCUCagCGGCGGCa--GCGgCG- -5'
11099 3' -64.3 NC_002794.1 + 30985 0.78 0.133999
Target:  5'- cCCCGGCGAcGgcggggucuUCGCCGgaCGUCGCCGCc -3'
miRNA:   3'- cGGGCCGCU-C---------AGCGGCg-GCAGCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 90475 0.78 0.133999
Target:  5'- cGCgCGGCGGG--GCCGCCGUC-CCGCg -3'
miRNA:   3'- -CGgGCCGCUCagCGGCGGCAGcGGCG- -5'
11099 3' -64.3 NC_002794.1 + 181594 0.78 0.137212
Target:  5'- gGCCgCGacCGGGUCGCC-CCGUUGCCGCa -3'
miRNA:   3'- -CGG-GCc-GCUCAGCGGcGGCAGCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 37763 0.78 0.143851
Target:  5'- gGCgCCGGCGGGagcggcCGUCGUCGUCGgCCGCa -3'
miRNA:   3'- -CG-GGCCGCUCa-----GCGGCGGCAGC-GGCG- -5'
11099 3' -64.3 NC_002794.1 + 28680 0.78 0.143851
Target:  5'- -gCCGGUGGccGUCGCCGCCGcCGuuGCu -3'
miRNA:   3'- cgGGCCGCU--CAGCGGCGGCaGCggCG- -5'
11099 3' -64.3 NC_002794.1 + 66007 0.78 0.145214
Target:  5'- uCCCGGCaccgaggcggccgcGGUCGUCGCCGUCGUCGUc -3'
miRNA:   3'- cGGGCCGc-------------UCAGCGGCGGCAGCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 57998 0.77 0.150782
Target:  5'- cGCCaGGCcuucGUCGCCGCCGgggcCGCCGCc -3'
miRNA:   3'- -CGGgCCGcu--CAGCGGCGGCa---GCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 105725 0.77 0.157647
Target:  5'- uCgCGGCGGccgucgggaaagcGUCGUCGCCGUCGUCGCc -3'
miRNA:   3'- cGgGCCGCU-------------CAGCGGCGGCAGCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 110295 0.77 0.158016
Target:  5'- gGCCCGagagccGCGGGgacucuccgcUCGCCGCCGcgaCGCCGCg -3'
miRNA:   3'- -CGGGC------CGCUC----------AGCGGCGGCa--GCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 137548 0.77 0.158016
Target:  5'- uUCgGGCGcgaAGaacgucgCGCCGCCGUCGCCGCc -3'
miRNA:   3'- cGGgCCGC---UCa------GCGGCGGCAGCGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.