miRNA display CGI


Results 41 - 60 of 442 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11099 3' -64.3 NC_002794.1 + 60661 0.77 0.158016
Target:  5'- aCCCGGCGcG-CGCCGCCGcCGCCu- -3'
miRNA:   3'- cGGGCCGCuCaGCGGCGGCaGCGGcg -5'
11099 3' -64.3 NC_002794.1 + 194030 0.77 0.161749
Target:  5'- -gCCGGCGccUCGcCCGCCGcCGCCGCc -3'
miRNA:   3'- cgGGCCGCucAGC-GGCGGCaGCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 193288 0.77 0.165561
Target:  5'- uGCgCCGGU-AGUCGCCGuCCGcuccgCGCCGCa -3'
miRNA:   3'- -CG-GGCCGcUCAGCGGC-GGCa----GCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 188308 0.77 0.165561
Target:  5'- aCCCGGCccGUCGUCGUcguccuCGUCGCCGCc -3'
miRNA:   3'- cGGGCCGcuCAGCGGCG------GCAGCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 71785 0.77 0.165561
Target:  5'- cGCgCGGCGAGUCGCCccCCGgcgggCGCgGCg -3'
miRNA:   3'- -CGgGCCGCUCAGCGGc-GGCa----GCGgCG- -5'
11099 3' -64.3 NC_002794.1 + 116225 0.77 0.165561
Target:  5'- cGCgCGGCucGAGUCGaugcCCGCCGUgCGCCGUa -3'
miRNA:   3'- -CGgGCCG--CUCAGC----GGCGGCA-GCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 24081 0.76 0.169454
Target:  5'- cGCCCgGGCGGG-CGUCGCCGUauuaaaGaCCGCg -3'
miRNA:   3'- -CGGG-CCGCUCaGCGGCGGCAg-----C-GGCG- -5'
11099 3' -64.3 NC_002794.1 + 11985 0.76 0.173028
Target:  5'- cGUCCGGCGgcuGGUUGCUGCUGUguggacugaugugCGCCGCc -3'
miRNA:   3'- -CGGGCCGC---UCAGCGGCGGCA-------------GCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 192313 0.76 0.181628
Target:  5'- cGUCCGcGC---UCGCCGCCGcCGCCGCu -3'
miRNA:   3'- -CGGGC-CGcucAGCGGCGGCaGCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 82672 0.76 0.181628
Target:  5'- cGCgCCGGCGGaUCGCaCGCCGuUCGCCcgGCg -3'
miRNA:   3'- -CG-GGCCGCUcAGCG-GCGGC-AGCGG--CG- -5'
11099 3' -64.3 NC_002794.1 + 16539 0.76 0.185855
Target:  5'- cCCCGGCGuccccggcGUCGCCaccgccaccGCCGcCGCCGCc -3'
miRNA:   3'- cGGGCCGCu-------CAGCGG---------CGGCaGCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 123264 0.76 0.190169
Target:  5'- -gCCGGCuGGUCcggGCCGCgGUCGUCGCg -3'
miRNA:   3'- cgGGCCGcUCAG---CGGCGgCAGCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 63930 0.76 0.19457
Target:  5'- cGCCCGGCcggcgagucucGAGUCcgaCGCC-UCGCCGCg -3'
miRNA:   3'- -CGGGCCG-----------CUCAGcg-GCGGcAGCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 185219 0.76 0.19457
Target:  5'- cGCCgCGGaGAGUCG-CGCCGacCGCCGCg -3'
miRNA:   3'- -CGG-GCCgCUCAGCgGCGGCa-GCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 118180 0.75 0.202257
Target:  5'- --gCGGCGAcgcgccgaccuuccGUCGCCGCCGcCGUCGCc -3'
miRNA:   3'- cggGCCGCU--------------CAGCGGCGGCaGCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 186359 0.75 0.208312
Target:  5'- uGCCCGaCcAGcCGCCGCCGcCGCCGUc -3'
miRNA:   3'- -CGGGCcGcUCaGCGGCGGCaGCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 49478 0.75 0.213075
Target:  5'- gGCCgCcGCGGGucugucgaccUCGUCGCCGUCGUCGCu -3'
miRNA:   3'- -CGG-GcCGCUC----------AGCGGCGGCAGCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 185176 0.75 0.213075
Target:  5'- gGCgCGGCGcGGUCGgCGCgGUCGgCGCg -3'
miRNA:   3'- -CGgGCCGC-UCAGCgGCGgCAGCgGCG- -5'
11099 3' -64.3 NC_002794.1 + 128847 0.75 0.213075
Target:  5'- aGCgCCGGCGucgacGaCGCCGCUGcCGCCGUg -3'
miRNA:   3'- -CG-GGCCGCu----CaGCGGCGGCaGCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 137642 0.75 0.213075
Target:  5'- uCCUGGCGGG-CGCCGggccuCCGgCGCCGCu -3'
miRNA:   3'- cGGGCCGCUCaGCGGC-----GGCaGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.