miRNA display CGI


Results 61 - 80 of 442 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11099 3' -64.3 NC_002794.1 + 124388 0.75 0.217932
Target:  5'- gGUCgCGGCGGcgcGUCGCCggucgucggggcGCCGUCcGCCGCg -3'
miRNA:   3'- -CGG-GCCGCU---CAGCGG------------CGGCAG-CGGCG- -5'
11099 3' -64.3 NC_002794.1 + 137592 0.75 0.217932
Target:  5'- aGUgCGGgGAGcCGCCGCCGgcggUCGCgGCg -3'
miRNA:   3'- -CGgGCCgCUCaGCGGCGGC----AGCGgCG- -5'
11099 3' -64.3 NC_002794.1 + 14740 0.75 0.222384
Target:  5'- gGUCCGGCGcGUCaucggagcccgaaGCCGUCGagGCCGCu -3'
miRNA:   3'- -CGGGCCGCuCAG-------------CGGCGGCagCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 47390 0.75 0.222883
Target:  5'- aGCCCGaGCccGAGcccgaaGCCGCCGUCGgCGCc -3'
miRNA:   3'- -CGGGC-CG--CUCag----CGGCGGCAGCgGCG- -5'
11099 3' -64.3 NC_002794.1 + 189853 0.75 0.222883
Target:  5'- gGCCgCGGagccGUCGgCGUCGUCGCCGCc -3'
miRNA:   3'- -CGG-GCCgcu-CAGCgGCGGCAGCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 110542 0.74 0.227421
Target:  5'- aCgCGGCGAcgacgugcuccgcGUCGUCGCCGUCGUCGa -3'
miRNA:   3'- cGgGCCGCU-------------CAGCGGCGGCAGCGGCg -5'
11099 3' -64.3 NC_002794.1 + 53242 0.74 0.22793
Target:  5'- cCUCGGCccgccgCGCCGgCGUCGCCGCg -3'
miRNA:   3'- cGGGCCGcuca--GCGGCgGCAGCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 80203 0.74 0.22793
Target:  5'- cGCCUgGGCG-GUCGacgaCGCC-UCGCCGCa -3'
miRNA:   3'- -CGGG-CCGCuCAGCg---GCGGcAGCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 55527 0.74 0.237784
Target:  5'- aGCCCGGCGGccccGUCGCCcucCCGUuugcucuUGCCGUa -3'
miRNA:   3'- -CGGGCCGCU----CAGCGGc--GGCA-------GCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 70666 0.74 0.237784
Target:  5'- uGCgCGGCG-GcCGCCGCggcggugacguccUGUCGCCGCu -3'
miRNA:   3'- -CGgGCCGCuCaGCGGCG-------------GCAGCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 66714 0.74 0.238312
Target:  5'- cGCCCGGCacGGcCGCCGCCacCGCCGg -3'
miRNA:   3'- -CGGGCCGc-UCaGCGGCGGcaGCGGCg -5'
11099 3' -64.3 NC_002794.1 + 75564 0.74 0.238312
Target:  5'- gGCCCGcucaacuucuccGCGcAGUgGCUGCCGgcCGCCGCg -3'
miRNA:   3'- -CGGGC------------CGC-UCAgCGGCGGCa-GCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 92058 0.74 0.24365
Target:  5'- uGUCCGGCGuGcCGCgGCCGgUGCUGCc -3'
miRNA:   3'- -CGGGCCGCuCaGCGgCGGCaGCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 192437 0.74 0.24365
Target:  5'- cGgCCGGCGcGUCGCgCGCCucgcaGUCGCgCGCc -3'
miRNA:   3'- -CgGGCCGCuCAGCG-GCGG-----CAGCG-GCG- -5'
11099 3' -64.3 NC_002794.1 + 134149 0.74 0.249088
Target:  5'- aGCUCGGUccGuGUUGCUgGCCGUgGCCGCg -3'
miRNA:   3'- -CGGGCCG--CuCAGCGG-CGGCAgCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 81545 0.74 0.254625
Target:  5'- aGCgCUGGaCGGcuGcCGCCGCCGcCGCCGCc -3'
miRNA:   3'- -CG-GGCC-GCU--CaGCGGCGGCaGCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 86949 0.74 0.254625
Target:  5'- aUCCGGCGAG-CGUCGaCGUCcGCUGCg -3'
miRNA:   3'- cGGGCCGCUCaGCGGCgGCAG-CGGCG- -5'
11099 3' -64.3 NC_002794.1 + 16700 0.74 0.254625
Target:  5'- cGCUC-GCGAGUCGCuCGCCGUccgaggagucugCGCCGg -3'
miRNA:   3'- -CGGGcCGCUCAGCG-GCGGCA------------GCGGCg -5'
11099 3' -64.3 NC_002794.1 + 47738 0.74 0.254625
Target:  5'- aGCCCGcCGGGUCcacguggcgGCCGUgGUCGCgGCa -3'
miRNA:   3'- -CGGGCcGCUCAG---------CGGCGgCAGCGgCG- -5'
11099 3' -64.3 NC_002794.1 + 116083 0.74 0.254625
Target:  5'- cGCUCGGCGcggcGGUCGUCGCCGggGUCGa -3'
miRNA:   3'- -CGGGCCGC----UCAGCGGCGGCagCGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.