miRNA display CGI


Results 21 - 40 of 442 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11099 3' -64.3 NC_002794.1 + 116916 0.66 0.650793
Target:  5'- gGUCCGGCGucggcuccggcGUCGUCGgCGUCcCCGg -3'
miRNA:   3'- -CGGGCCGCu----------CAGCGGCgGCAGcGGCg -5'
11099 3' -64.3 NC_002794.1 + 115185 0.66 0.650793
Target:  5'- gGCCCGGUGccggcGGUCgaGCCGgCGUagCGCCu- -3'
miRNA:   3'- -CGGGCCGC-----UCAG--CGGCgGCA--GCGGcg -5'
11099 3' -64.3 NC_002794.1 + 128171 0.66 0.650793
Target:  5'- cGCCgCGGaCGGGUCGgUGaccuCGUCgGUCGCg -3'
miRNA:   3'- -CGG-GCC-GCUCAGCgGCg---GCAG-CGGCG- -5'
11099 3' -64.3 NC_002794.1 + 124487 0.66 0.650793
Target:  5'- cGCCCGGaccgccggaugGAGUCG-CGUCG--GCCGCg -3'
miRNA:   3'- -CGGGCCg----------CUCAGCgGCGGCagCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 38177 0.66 0.647981
Target:  5'- cGCUCGGCGAcgaaggcguuccugGUC-UCGUCGuUCGCgCGCg -3'
miRNA:   3'- -CGGGCCGCU--------------CAGcGGCGGC-AGCG-GCG- -5'
11099 3' -64.3 NC_002794.1 + 121875 0.66 0.647981
Target:  5'- uGCCaCGGCGAGUUGgggugggugcgguaCUGCgucgacuggaCGUCGcCCGCc -3'
miRNA:   3'- -CGG-GCCGCUCAGC--------------GGCG----------GCAGC-GGCG- -5'
11099 3' -64.3 NC_002794.1 + 187833 0.66 0.647981
Target:  5'- cGCUCGGCucGgcgCGCCgagggcucugcccaGCCGcgcgcggcUCGCCGCu -3'
miRNA:   3'- -CGGGCCGcuCa--GCGG--------------CGGC--------AGCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 74117 0.66 0.641416
Target:  5'- aCCCu-CGAGcagGCCGCCGcCGCCGUc -3'
miRNA:   3'- cGGGccGCUCag-CGGCGGCaGCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 94018 0.66 0.641416
Target:  5'- gGgCCGGCGGGUucCGCCGgCGggcccgagaGCgGCg -3'
miRNA:   3'- -CgGGCCGCUCA--GCGGCgGCag-------CGgCG- -5'
11099 3' -64.3 NC_002794.1 + 81787 0.66 0.641416
Target:  5'- cGUCC-GCGAGauuucCGCUGCC-UCaGCCGCg -3'
miRNA:   3'- -CGGGcCGCUCa----GCGGCGGcAG-CGGCG- -5'
11099 3' -64.3 NC_002794.1 + 157049 0.66 0.641416
Target:  5'- aGUCCGGCGAGacCGUCGCgGagcauggcccCGCCGa -3'
miRNA:   3'- -CGGGCCGCUCa-GCGGCGgCa---------GCGGCg -5'
11099 3' -64.3 NC_002794.1 + 191656 0.66 0.641416
Target:  5'- aGCCCGcCGGGggaCGgCGCCGgcaGCgGCg -3'
miRNA:   3'- -CGGGCcGCUCa--GCgGCGGCag-CGgCG- -5'
11099 3' -64.3 NC_002794.1 + 181750 0.66 0.641416
Target:  5'- cGgCCGGCcAGccCGCugaCGCCGauggCGCCGCg -3'
miRNA:   3'- -CgGGCCGcUCa-GCG---GCGGCa---GCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 77021 0.66 0.632033
Target:  5'- -gCCGGCGcaccUCGaCCGCuCGUCcCCGCu -3'
miRNA:   3'- cgGGCCGCuc--AGC-GGCG-GCAGcGGCG- -5'
11099 3' -64.3 NC_002794.1 + 68745 0.66 0.632033
Target:  5'- cCCCGGaggccgacUGAGcCggGCCGCCGgggCGCCGg -3'
miRNA:   3'- cGGGCC--------GCUCaG--CGGCGGCa--GCGGCg -5'
11099 3' -64.3 NC_002794.1 + 82360 0.66 0.632033
Target:  5'- cGCCCGuCc--UCGCCGCCcgacacCGCCGCg -3'
miRNA:   3'- -CGGGCcGcucAGCGGCGGca----GCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 102975 0.66 0.632033
Target:  5'- aGCgCGGCGGcuccgguuuauuGUCGUCGCuCGacucgaGCCGCu -3'
miRNA:   3'- -CGgGCCGCU------------CAGCGGCG-GCag----CGGCG- -5'
11099 3' -64.3 NC_002794.1 + 113879 0.66 0.632033
Target:  5'- cGCUCGGCcg--CGgCGCgCGUCGgCGCg -3'
miRNA:   3'- -CGGGCCGcucaGCgGCG-GCAGCgGCG- -5'
11099 3' -64.3 NC_002794.1 + 46137 0.66 0.632033
Target:  5'- cCCCGucCGAGUCGgCGUCGaUCGCCc- -3'
miRNA:   3'- cGGGCc-GCUCAGCgGCGGC-AGCGGcg -5'
11099 3' -64.3 NC_002794.1 + 143270 0.66 0.632033
Target:  5'- gGCCCGGCc---CGgCGCCG--GCCGCu -3'
miRNA:   3'- -CGGGCCGcucaGCgGCGGCagCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.