miRNA display CGI


Results 41 - 60 of 442 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11099 3' -64.3 NC_002794.1 + 102975 0.66 0.632033
Target:  5'- aGCgCGGCGGcuccgguuuauuGUCGUCGCuCGacucgaGCCGCu -3'
miRNA:   3'- -CGgGCCGCU------------CAGCGGCG-GCag----CGGCG- -5'
11099 3' -64.3 NC_002794.1 + 113879 0.66 0.632033
Target:  5'- cGCUCGGCcg--CGgCGCgCGUCGgCGCg -3'
miRNA:   3'- -CGGGCCGcucaGCgGCG-GCAGCgGCG- -5'
11099 3' -64.3 NC_002794.1 + 46137 0.66 0.632033
Target:  5'- cCCCGucCGAGUCGgCGUCGaUCGCCc- -3'
miRNA:   3'- cGGGCc-GCUCAGCgGCGGC-AGCGGcg -5'
11099 3' -64.3 NC_002794.1 + 194002 0.66 0.632033
Target:  5'- cCCCGGCu--UCGCCuucGCgGcCGCCGCc -3'
miRNA:   3'- cGGGCCGcucAGCGG---CGgCaGCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 115573 0.66 0.631095
Target:  5'- aGCUCGGCGAacgggacGUagcgGCUGCgGUCGacCCGCu -3'
miRNA:   3'- -CGGGCCGCU-------CAg---CGGCGgCAGC--GGCG- -5'
11099 3' -64.3 NC_002794.1 + 156019 0.66 0.62265
Target:  5'- gGUCUcaUGGGUCGCaGCCGUCGCguCGCg -3'
miRNA:   3'- -CGGGccGCUCAGCGgCGGCAGCG--GCG- -5'
11099 3' -64.3 NC_002794.1 + 93989 0.66 0.62265
Target:  5'- cGCUCGGCGcGGaCGCCGgCGcCgGCgGCg -3'
miRNA:   3'- -CGGGCCGC-UCaGCGGCgGCaG-CGgCG- -5'
11099 3' -64.3 NC_002794.1 + 107531 0.66 0.62265
Target:  5'- cGgCCGGCGcGG-CGCCGgCGgcgaCGaCCGCg -3'
miRNA:   3'- -CgGGCCGC-UCaGCGGCgGCa---GC-GGCG- -5'
11099 3' -64.3 NC_002794.1 + 192221 0.66 0.62265
Target:  5'- aGCgCGaCGAagaagaucggCGCUGCCGUCGCCGa -3'
miRNA:   3'- -CGgGCcGCUca--------GCGGCGGCAGCGGCg -5'
11099 3' -64.3 NC_002794.1 + 83836 0.66 0.62265
Target:  5'- cUCCGGCcgaucGGUCGCCgaucgggaaGCCGUCGUCcCg -3'
miRNA:   3'- cGGGCCGc----UCAGCGG---------CGGCAGCGGcG- -5'
11099 3' -64.3 NC_002794.1 + 116673 0.66 0.62265
Target:  5'- uGCUCGGCGAGcgUGUCGauCCGggaGCCGg -3'
miRNA:   3'- -CGGGCCGCUCa-GCGGC--GGCag-CGGCg -5'
11099 3' -64.3 NC_002794.1 + 126356 0.66 0.62265
Target:  5'- uCCCGGCuccgauuUCGCCGCUGcgugggCGCCGg -3'
miRNA:   3'- cGGGCCGcuc----AGCGGCGGCa-----GCGGCg -5'
11099 3' -64.3 NC_002794.1 + 46583 0.66 0.62265
Target:  5'- aCCCGacacGCGAcccugaaccuGUcCGCCGCCGUccgCGCCGg -3'
miRNA:   3'- cGGGC----CGCU----------CA-GCGGCGGCA---GCGGCg -5'
11099 3' -64.3 NC_002794.1 + 189368 0.66 0.62265
Target:  5'- uGCCCaGGCuGAGccgcUCGCCGCUGU-GCUcgGCc -3'
miRNA:   3'- -CGGG-CCG-CUC----AGCGGCGGCAgCGG--CG- -5'
11099 3' -64.3 NC_002794.1 + 183171 0.66 0.62265
Target:  5'- uGCCCGaGCcGGUCGgggaCCGagaCG-CGCCGCc -3'
miRNA:   3'- -CGGGC-CGcUCAGC----GGCg--GCaGCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 110894 0.66 0.621712
Target:  5'- uGCCgGGCcagcaaGAGcCGCCGCCGcCcgaagagGUCGCu -3'
miRNA:   3'- -CGGgCCG------CUCaGCGGCGGCaG-------CGGCG- -5'
11099 3' -64.3 NC_002794.1 + 147836 0.66 0.621712
Target:  5'- -gCCGGUG-GUCgaGCCGUugugcauccugggCGUCGUCGCg -3'
miRNA:   3'- cgGGCCGCuCAG--CGGCG-------------GCAGCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 113181 0.66 0.619836
Target:  5'- --gCGGCG-GUcgcggaggcgccucCGCCGCCGccacCGCCGCc -3'
miRNA:   3'- cggGCCGCuCA--------------GCGGCGGCa---GCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 151704 0.67 0.617023
Target:  5'- -gCCGGcCGAGcgCGCCagucgcgcgaaggacGUCGUCGgCCGCc -3'
miRNA:   3'- cgGGCC-GCUCa-GCGG---------------CGGCAGC-GGCG- -5'
11099 3' -64.3 NC_002794.1 + 64812 0.67 0.613273
Target:  5'- cGCCgcggacggCGGCGAGcCGgCGCCGaCGaCCGg -3'
miRNA:   3'- -CGG--------GCCGCUCaGCgGCGGCaGC-GGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.