miRNA display CGI


Results 61 - 80 of 442 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11099 3' -64.3 NC_002794.1 + 42261 0.67 0.613273
Target:  5'- aGCCCGcucCGcccUCGCC-CCGcCGCCGCu -3'
miRNA:   3'- -CGGGCc--GCuc-AGCGGcGGCaGCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 146262 0.67 0.613273
Target:  5'- cCUCGuCGucGUCGUCGUCGUCGUCGUc -3'
miRNA:   3'- cGGGCcGCu-CAGCGGCGGCAGCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 146557 0.67 0.613273
Target:  5'- aGCUCGGCGGG-C-CCGaguuCCGagucCGCCGCg -3'
miRNA:   3'- -CGGGCCGCUCaGcGGC----GGCa---GCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 14593 0.67 0.613273
Target:  5'- gGCCgUGGCGAG-CG-CGCCGggCaCCGCg -3'
miRNA:   3'- -CGG-GCCGCUCaGCgGCGGCa-GcGGCG- -5'
11099 3' -64.3 NC_002794.1 + 58832 0.67 0.613273
Target:  5'- cGCCUGccgcGCGAGgaCGCCGacgugcagcUCGUCGCCGa -3'
miRNA:   3'- -CGGGC----CGCUCa-GCGGC---------GGCAGCGGCg -5'
11099 3' -64.3 NC_002794.1 + 25544 0.67 0.613273
Target:  5'- -gCCGGCcAGUCucaGCCGCCGUUcaccuucuCCGCu -3'
miRNA:   3'- cgGGCCGcUCAG---CGGCGGCAGc-------GGCG- -5'
11099 3' -64.3 NC_002794.1 + 65183 0.67 0.613273
Target:  5'- -aCCGGCGGGU-GCCGgCGagGUCGg -3'
miRNA:   3'- cgGGCCGCUCAgCGGCgGCagCGGCg -5'
11099 3' -64.3 NC_002794.1 + 34780 0.67 0.613273
Target:  5'- cGCCCGcGCcagccGAGUCgGCCGaaCCGgcccggGCCGCg -3'
miRNA:   3'- -CGGGC-CG-----CUCAG-CGGC--GGCag----CGGCG- -5'
11099 3' -64.3 NC_002794.1 + 64812 0.67 0.613273
Target:  5'- cGCCgcggacggCGGCGAGcCGgCGCCGaCGaCCGg -3'
miRNA:   3'- -CGG--------GCCGCUCaGCgGCGGCaGC-GGCg -5'
11099 3' -64.3 NC_002794.1 + 73926 0.67 0.613273
Target:  5'- aCCUGGCucucGUCGCCGCCGaacgcuuccUgGCCaGCu -3'
miRNA:   3'- cGGGCCGcu--CAGCGGCGGC---------AgCGG-CG- -5'
11099 3' -64.3 NC_002794.1 + 16166 0.67 0.612336
Target:  5'- gGCaugaaCGGCGGGUgGCCGaCCGUgaacuguacguccCGCCuggGCa -3'
miRNA:   3'- -CGg----GCCGCUCAgCGGC-GGCA-------------GCGG---CG- -5'
11099 3' -64.3 NC_002794.1 + 154311 0.67 0.603909
Target:  5'- aGCCuccucgggagagCGGCGucGGUCGUC-CCGggUGCCGCg -3'
miRNA:   3'- -CGG------------GCCGC--UCAGCGGcGGCa-GCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 185056 0.67 0.603909
Target:  5'- aGCgUGGUcugcAGcCGCCGCggccCGUCGCCGUa -3'
miRNA:   3'- -CGgGCCGc---UCaGCGGCG----GCAGCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 180881 0.67 0.603909
Target:  5'- aUCCGGCGcgcccGGUCucgGCCGCgGacUCGgCCGCg -3'
miRNA:   3'- cGGGCCGC-----UCAG---CGGCGgC--AGC-GGCG- -5'
11099 3' -64.3 NC_002794.1 + 188341 0.67 0.603909
Target:  5'- -gCCGGCG-G-CGCCGUCG-CGcCCGUc -3'
miRNA:   3'- cgGGCCGCuCaGCGGCGGCaGC-GGCG- -5'
11099 3' -64.3 NC_002794.1 + 193804 0.67 0.603909
Target:  5'- -gCCGGCGcccgcucgucuGG-CGCCGaCgCGUCGCgGCg -3'
miRNA:   3'- cgGGCCGC-----------UCaGCGGC-G-GCAGCGgCG- -5'
11099 3' -64.3 NC_002794.1 + 51361 0.67 0.603909
Target:  5'- cGCCCgaGGCG-GcCGCC-CCGUCcgGCCGg -3'
miRNA:   3'- -CGGG--CCGCuCaGCGGcGGCAG--CGGCg -5'
11099 3' -64.3 NC_002794.1 + 31407 0.67 0.603909
Target:  5'- cGCCCGccGCGcc-CGCCGCCuUCGUCGa -3'
miRNA:   3'- -CGGGC--CGCucaGCGGCGGcAGCGGCg -5'
11099 3' -64.3 NC_002794.1 + 191193 0.67 0.603909
Target:  5'- cGCCCGGCcgccCGcCCGCuCGcUCGCuCGCu -3'
miRNA:   3'- -CGGGCCGcucaGC-GGCG-GC-AGCG-GCG- -5'
11099 3' -64.3 NC_002794.1 + 141526 0.67 0.603909
Target:  5'- cGCCUgGGCGGGcUGCuCGCCGaaGgCGCg -3'
miRNA:   3'- -CGGG-CCGCUCaGCG-GCGGCagCgGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.