miRNA display CGI


Results 81 - 100 of 442 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11099 3' -64.3 NC_002794.1 + 180881 0.67 0.603909
Target:  5'- aUCCGGCGcgcccGGUCucgGCCGCgGacUCGgCCGCg -3'
miRNA:   3'- cGGGCCGC-----UCAG---CGGCGgC--AGC-GGCG- -5'
11099 3' -64.3 NC_002794.1 + 188341 0.67 0.603909
Target:  5'- -gCCGGCG-G-CGCCGUCG-CGcCCGUc -3'
miRNA:   3'- cgGGCCGCuCaGCGGCGGCaGC-GGCG- -5'
11099 3' -64.3 NC_002794.1 + 193804 0.67 0.603909
Target:  5'- -gCCGGCGcccgcucgucuGG-CGCCGaCgCGUCGCgGCg -3'
miRNA:   3'- cgGGCCGC-----------UCaGCGGC-G-GCAGCGgCG- -5'
11099 3' -64.3 NC_002794.1 + 51361 0.67 0.603909
Target:  5'- cGCCCgaGGCG-GcCGCC-CCGUCcgGCCGg -3'
miRNA:   3'- -CGGG--CCGCuCaGCGGcGGCAG--CGGCg -5'
11099 3' -64.3 NC_002794.1 + 31407 0.67 0.603909
Target:  5'- cGCCCGccGCGcc-CGCCGCCuUCGUCGa -3'
miRNA:   3'- -CGGGC--CGCucaGCGGCGGcAGCGGCg -5'
11099 3' -64.3 NC_002794.1 + 191193 0.67 0.603909
Target:  5'- cGCCCGGCcgccCGcCCGCuCGcUCGCuCGCu -3'
miRNA:   3'- -CGGGCCGcucaGC-GGCG-GC-AGCG-GCG- -5'
11099 3' -64.3 NC_002794.1 + 113227 0.67 0.603909
Target:  5'- cGCCCgGGCGA----CCGCCGUccaggaucuccCGCUGCa -3'
miRNA:   3'- -CGGG-CCGCUcagcGGCGGCA-----------GCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 84421 0.67 0.601102
Target:  5'- cGCCaucuccaucgaCGGCGAcGUgccgaacgagggccUGCCGCCGaaagCGCCGUc -3'
miRNA:   3'- -CGG-----------GCCGCU-CA--------------GCGGCGGCa---GCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 96924 0.67 0.594561
Target:  5'- gGCgCCGGCGAca-GCaCGCCGUCGgaGUc -3'
miRNA:   3'- -CG-GGCCGCUcagCG-GCGGCAGCggCG- -5'
11099 3' -64.3 NC_002794.1 + 146836 0.67 0.594561
Target:  5'- cGUuuGGCgcgaGAGUCGgUGCgCGUCGuUCGCg -3'
miRNA:   3'- -CGggCCG----CUCAGCgGCG-GCAGC-GGCG- -5'
11099 3' -64.3 NC_002794.1 + 91609 0.67 0.594561
Target:  5'- cGCgCGGcCGAGggccaCGCCGaCCuccugCGCCGCc -3'
miRNA:   3'- -CGgGCC-GCUCa----GCGGC-GGca---GCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 13848 0.67 0.594561
Target:  5'- cCCCacCGccUCGUCGCCGcCGCCGCg -3'
miRNA:   3'- cGGGccGCucAGCGGCGGCaGCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 42634 0.67 0.594561
Target:  5'- cGCUCucacaGCgGAGUCGCgGCCGaagccgacggCGCCGCc -3'
miRNA:   3'- -CGGGc----CG-CUCAGCGgCGGCa---------GCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 101035 0.67 0.594561
Target:  5'- gGCCgGGCGcgGGUCgGCCGCUacugcgugcagGaCGCCGUc -3'
miRNA:   3'- -CGGgCCGC--UCAG-CGGCGG-----------CaGCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 86834 0.67 0.594561
Target:  5'- cGCCgGGauCGGGUCGgcggccCCGCCGggauugggucUGCCGCg -3'
miRNA:   3'- -CGGgCC--GCUCAGC------GGCGGCa---------GCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 105623 0.67 0.588964
Target:  5'- gGCUCGGCGAccagcccgaguacgcGUUcuCCGUC-UCGCCGCg -3'
miRNA:   3'- -CGGGCCGCU---------------CAGc-GGCGGcAGCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 129244 0.67 0.585237
Target:  5'- gGCuCCGGCGgacucgGGUCGagCGCC-UCGUCGUg -3'
miRNA:   3'- -CG-GGCCGC------UCAGCg-GCGGcAGCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 148781 0.67 0.585237
Target:  5'- cGCCUGGUacccGGUcCGCa-CCGUCGCCGa -3'
miRNA:   3'- -CGGGCCGc---UCA-GCGgcGGCAGCGGCg -5'
11099 3' -64.3 NC_002794.1 + 114748 0.67 0.585237
Target:  5'- -gCCGGCGc--CGcCCGCCGgCGCCGg -3'
miRNA:   3'- cgGGCCGCucaGC-GGCGGCaGCGGCg -5'
11099 3' -64.3 NC_002794.1 + 68938 0.67 0.585237
Target:  5'- cGCCC-GCGGGcCGCggCGCCGgCGCCu- -3'
miRNA:   3'- -CGGGcCGCUCaGCG--GCGGCaGCGGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.