miRNA display CGI


Results 21 - 40 of 442 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11099 3' -64.3 NC_002794.1 + 16222 0.69 0.450489
Target:  5'- gGUCCGGCGGGUCaggucggGCUgGCaCGUCcCCGCc -3'
miRNA:   3'- -CGGGCCGCUCAG-------CGG-CG-GCAGcGGCG- -5'
11099 3' -64.3 NC_002794.1 + 16468 0.72 0.309061
Target:  5'- cGUCCGGCugcccAGccCGCCGCCGccucCGCCGCc -3'
miRNA:   3'- -CGGGCCGc----UCa-GCGGCGGCa---GCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 16539 0.76 0.185855
Target:  5'- cCCCGGCGuccccggcGUCGCCaccgccaccGCCGcCGCCGCc -3'
miRNA:   3'- cGGGCCGCu-------CAGCGG---------CGGCaGCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 16700 0.74 0.254625
Target:  5'- cGCUC-GCGAGUCGCuCGCCGUccgaggagucugCGCCGg -3'
miRNA:   3'- -CGGGcCGCUCAGCG-GCGGCA------------GCGGCg -5'
11099 3' -64.3 NC_002794.1 + 16878 0.69 0.468299
Target:  5'- cGCCgCGGC-AGcaaccacCGCCGCCGcgacaGCCGCg -3'
miRNA:   3'- -CGG-GCCGcUCa------GCGGCGGCag---CGGCG- -5'
11099 3' -64.3 NC_002794.1 + 17192 0.67 0.585237
Target:  5'- cCCCGGUcuGUacgacgacacCGCCGCCGccaccacCGCCGCc -3'
miRNA:   3'- cGGGCCGcuCA----------GCGGCGGCa------GCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 17264 0.68 0.521041
Target:  5'- aCCCGGCucGUCacccggGCaCGCCGcCGCCGa -3'
miRNA:   3'- cGGGCCGcuCAG------CG-GCGGCaGCGGCg -5'
11099 3' -64.3 NC_002794.1 + 17627 0.81 0.084798
Target:  5'- cGCCgCGGCGAGcgauccCGCCGCCGcggcCGCCGCc -3'
miRNA:   3'- -CGG-GCCGCUCa-----GCGGCGGCa---GCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 18654 0.7 0.418434
Target:  5'- aCCCGGgaCGAccGUCGCCGCUuccucggcuGcCGCCGCc -3'
miRNA:   3'- cGGGCC--GCU--CAGCGGCGG---------CaGCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 18830 0.69 0.476906
Target:  5'- cGgCCGGCgcgGAGgagaccucgaGCgCGCCGUCGCCGa -3'
miRNA:   3'- -CgGGCCG---CUCag--------CG-GCGGCAGCGGCg -5'
11099 3' -64.3 NC_002794.1 + 19326 0.72 0.34295
Target:  5'- cGCgCUGGCGAccCGCgCGCCGgucacccccUCGCCGCc -3'
miRNA:   3'- -CG-GGCCGCUcaGCG-GCGGC---------AGCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 19490 0.68 0.50318
Target:  5'- cGCCCgcaccgacgacGGCgGAGgucgCGCCGCuCGgagCGCCGg -3'
miRNA:   3'- -CGGG-----------CCG-CUCa---GCGGCG-GCa--GCGGCg -5'
11099 3' -64.3 NC_002794.1 + 20163 0.69 0.497873
Target:  5'- cGCCUGGCggccccauaccgcgaGAGccCGCCGCCcaaccugcuaCGCCGCa -3'
miRNA:   3'- -CGGGCCG---------------CUCa-GCGGCGGca--------GCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 21425 0.69 0.48037
Target:  5'- aGCCCGuccucCGAuaacgucggucucgcGUCGCuCGgCGUCGCCGUg -3'
miRNA:   3'- -CGGGCc----GCU---------------CAGCG-GCgGCAGCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 21938 0.71 0.364534
Target:  5'- gGCgCGGCGcucGUCGaagGCCGUCGgCCGCu -3'
miRNA:   3'- -CGgGCCGCu--CAGCgg-CGGCAGC-GGCG- -5'
11099 3' -64.3 NC_002794.1 + 21969 0.67 0.575942
Target:  5'- uCCC-GCG-G-CGCCGUCGUCuCCGCg -3'
miRNA:   3'- cGGGcCGCuCaGCGGCGGCAGcGGCG- -5'
11099 3' -64.3 NC_002794.1 + 22862 0.68 0.548276
Target:  5'- uCCCGGac-GUC-CCgGCCGUCGCgCGCu -3'
miRNA:   3'- cGGGCCgcuCAGcGG-CGGCAGCG-GCG- -5'
11099 3' -64.3 NC_002794.1 + 23234 0.71 0.350041
Target:  5'- aGCCCGGgGcGUUGCCGUgCGagccucCGCCGCc -3'
miRNA:   3'- -CGGGCCgCuCAGCGGCG-GCa-----GCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 23570 0.71 0.350041
Target:  5'- gGCCCGGUGc--CGCCGCCaccCGCCGa -3'
miRNA:   3'- -CGGGCCGCucaGCGGCGGca-GCGGCg -5'
11099 3' -64.3 NC_002794.1 + 23970 0.72 0.322302
Target:  5'- aGCCagCGGCGAGgccggCGCCaCCGUCGCUcCg -3'
miRNA:   3'- -CGG--GCCGCUCa----GCGGcGGCAGCGGcG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.