miRNA display CGI


Results 41 - 60 of 442 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11099 3' -64.3 NC_002794.1 + 24002 0.67 0.56668
Target:  5'- cGUCCGaCGG---GCCGCCGUCaCCGCg -3'
miRNA:   3'- -CGGGCcGCUcagCGGCGGCAGcGGCG- -5'
11099 3' -64.3 NC_002794.1 + 24081 0.76 0.169454
Target:  5'- cGCCCgGGCGGG-CGUCGCCGUauuaaaGaCCGCg -3'
miRNA:   3'- -CGGG-CCGCUCaGCGGCGGCAg-----C-GGCG- -5'
11099 3' -64.3 NC_002794.1 + 25544 0.67 0.613273
Target:  5'- -gCCGGCcAGUCucaGCCGCCGUUcaccuucuCCGCu -3'
miRNA:   3'- cgGGCCGcUCAG---CGGCGGCAGc-------GGCG- -5'
11099 3' -64.3 NC_002794.1 + 26105 0.67 0.56668
Target:  5'- cCCCGGCGA-UCGCCGUgGgccUGCCu- -3'
miRNA:   3'- cGGGCCGCUcAGCGGCGgCa--GCGGcg -5'
11099 3' -64.3 NC_002794.1 + 28680 0.78 0.143851
Target:  5'- -gCCGGUGGccGUCGCCGCCGcCGuuGCu -3'
miRNA:   3'- cgGGCCGCU--CAGCGGCGGCaGCggCG- -5'
11099 3' -64.3 NC_002794.1 + 28711 0.66 0.669502
Target:  5'- -gCUGcCGucGUCGCCGCCGUcCGaCCGUg -3'
miRNA:   3'- cgGGCcGCu-CAGCGGCGGCA-GC-GGCG- -5'
11099 3' -64.3 NC_002794.1 + 29208 0.81 0.082753
Target:  5'- cGUCCGGCG-GUCgGCgGCCGUCGgCCGCc -3'
miRNA:   3'- -CGGGCCGCuCAG-CGgCGGCAGC-GGCG- -5'
11099 3' -64.3 NC_002794.1 + 30079 0.67 0.603909
Target:  5'- cGCCCGGUcgacGAGgcgCGCgGCCgGUC-CCGa -3'
miRNA:   3'- -CGGGCCG----CUCa--GCGgCGG-CAGcGGCg -5'
11099 3' -64.3 NC_002794.1 + 30985 0.78 0.133999
Target:  5'- cCCCGGCGAcGgcggggucuUCGCCGgaCGUCGCCGCc -3'
miRNA:   3'- cGGGCCGCU-C---------AGCGGCg-GCAGCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 31335 0.69 0.459772
Target:  5'- gGCUCGGCGc----CCGCCGUgucCGCCGCc -3'
miRNA:   3'- -CGGGCCGCucagcGGCGGCA---GCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 31407 0.67 0.603909
Target:  5'- cGCCCGccGCGcc-CGCCGCCuUCGUCGa -3'
miRNA:   3'- -CGGGC--CGCucaGCGGCGGcAGCGGCg -5'
11099 3' -64.3 NC_002794.1 + 32276 0.85 0.046905
Target:  5'- gGCCgauCGGCGAGcgaCGCCGCCGcCGCCGCg -3'
miRNA:   3'- -CGG---GCCGCUCa--GCGGCGGCaGCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 32652 0.66 0.660157
Target:  5'- -aCCggGGCGAcggCGCCGuccCCGUCGuCCGCc -3'
miRNA:   3'- cgGG--CCGCUca-GCGGC---GGCAGC-GGCG- -5'
11099 3' -64.3 NC_002794.1 + 32705 0.66 0.660157
Target:  5'- -gCgGGCGAcUCGCCGCCacccGUCGgCGg -3'
miRNA:   3'- cgGgCCGCUcAGCGGCGG----CAGCgGCg -5'
11099 3' -64.3 NC_002794.1 + 33440 0.67 0.585237
Target:  5'- uCCCGGUGcAGgaccucgggCgGCCGCCGgacgcgcccaCGCCGCu -3'
miRNA:   3'- cGGGCCGC-UCa--------G-CGGCGGCa---------GCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 34780 0.67 0.613273
Target:  5'- cGCCCGcGCcagccGAGUCgGCCGaaCCGgcccggGCCGCg -3'
miRNA:   3'- -CGGGC-CG-----CUCAG-CGGC--GGCag----CGGCG- -5'
11099 3' -64.3 NC_002794.1 + 34853 0.73 0.277787
Target:  5'- cGUCgGaGCGGG-CGCCGCgGgCGCCGCg -3'
miRNA:   3'- -CGGgC-CGCUCaGCGGCGgCaGCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 35768 0.67 0.575942
Target:  5'- cGUCgCGGCaccGUCGCCGgCGUCGUCu- -3'
miRNA:   3'- -CGG-GCCGcu-CAGCGGCgGCAGCGGcg -5'
11099 3' -64.3 NC_002794.1 + 36234 0.68 0.502294
Target:  5'- gGCCCGGuCGAuauaggccccguaGUCGauggCGUCGUguaaCGCCGCg -3'
miRNA:   3'- -CGGGCC-GCU-------------CAGCg---GCGGCA----GCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 37536 0.66 0.660157
Target:  5'- cGgCUGGCGAacaGCCGCCGgaggggccaCGaCCGCg -3'
miRNA:   3'- -CgGGCCGCUcagCGGCGGCa--------GC-GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.