miRNA display CGI


Results 61 - 80 of 442 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11099 3' -64.3 NC_002794.1 + 37727 0.7 0.402543
Target:  5'- aCCC-GCGAGcggcggCGCCGCCGgcggCGgCGCg -3'
miRNA:   3'- cGGGcCGCUCa-----GCGGCGGCa---GCgGCG- -5'
11099 3' -64.3 NC_002794.1 + 37763 0.78 0.143851
Target:  5'- gGCgCCGGCGGGagcggcCGUCGUCGUCGgCCGCa -3'
miRNA:   3'- -CG-GGCCGCUCa-----GCGGCGGCAGC-GGCG- -5'
11099 3' -64.3 NC_002794.1 + 38177 0.66 0.647981
Target:  5'- cGCUCGGCGAcgaaggcguuccugGUC-UCGUCGuUCGCgCGCg -3'
miRNA:   3'- -CGGGCCGCU--------------CAGcGGCGGC-AGCG-GCG- -5'
11099 3' -64.3 NC_002794.1 + 38411 0.72 0.315629
Target:  5'- aCCCGGCGAG-CGCuCGCCGacuccaUgGCgGCg -3'
miRNA:   3'- cGGGCCGCUCaGCG-GCGGC------AgCGgCG- -5'
11099 3' -64.3 NC_002794.1 + 38476 0.68 0.50318
Target:  5'- cGCCCuuuaugGGCgGAGgaagcgcggCGgCGCCgGUCGCCGCn -3'
miRNA:   3'- -CGGG------CCG-CUCa--------GCgGCGG-CAGCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 38519 0.79 0.116136
Target:  5'- cGCCuCcGCGAucccagGUCGCCGCCGcCGCCGCc -3'
miRNA:   3'- -CGG-GcCGCU------CAGCGGCGGCaGCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 38600 0.66 0.632033
Target:  5'- uCCCGGaCGAGagGCCGgacgggcgcgucCCGacUCGCCGg -3'
miRNA:   3'- cGGGCC-GCUCagCGGC------------GGC--AGCGGCg -5'
11099 3' -64.3 NC_002794.1 + 38671 0.68 0.500523
Target:  5'- uCCCGcGCGcgacccgcggacggGGUCaCCGCCG-CGCCGUc -3'
miRNA:   3'- cGGGC-CGC--------------UCAGcGGCGGCaGCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 40493 0.7 0.434701
Target:  5'- cGgCCGGCgcucgccgcucGAGUCacgGCCGCCGacgCGCCGa -3'
miRNA:   3'- -CgGGCCG-----------CUCAG---CGGCGGCa--GCGGCg -5'
11099 3' -64.3 NC_002794.1 + 40584 0.69 0.451329
Target:  5'- gGCCgCGGgcccucuccucCGAGUCGUCGCCGgCGuCCGa -3'
miRNA:   3'- -CGG-GCC-----------GCUCAGCGGCGGCaGC-GGCg -5'
11099 3' -64.3 NC_002794.1 + 40673 0.7 0.410441
Target:  5'- uUCCGGUc-GUCGUCGUCGUCGUCGg -3'
miRNA:   3'- cGGGCCGcuCAGCGGCGGCAGCGGCg -5'
11099 3' -64.3 NC_002794.1 + 41243 0.68 0.50318
Target:  5'- cGCCgCGGCcgccGaCGCCGgcggcCCGUCGUCGCg -3'
miRNA:   3'- -CGG-GCCGcu--CaGCGGC-----GGCAGCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 41589 0.68 0.530064
Target:  5'- cGCacggaCGGCGccUCGCCGaCGUCGCgGUa -3'
miRNA:   3'- -CGg----GCCGCucAGCGGCgGCAGCGgCG- -5'
11099 3' -64.3 NC_002794.1 + 41833 0.67 0.577798
Target:  5'- gGCCCguGGuCGGGUCgaucagcagccccagGCCGCCGggcagggccgggCGCUGCc -3'
miRNA:   3'- -CGGG--CC-GCUCAG---------------CGGCGGCa-----------GCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 42187 0.67 0.575942
Target:  5'- cGCCacgauCGGcCGAaacUCGCCGCCGccggUCuGCCGCu -3'
miRNA:   3'- -CGG-----GCC-GCUc--AGCGGCGGC----AG-CGGCG- -5'
11099 3' -64.3 NC_002794.1 + 42261 0.67 0.613273
Target:  5'- aGCCCGcucCGcccUCGCC-CCGcCGCCGCu -3'
miRNA:   3'- -CGGGCc--GCuc-AGCGGcGGCaGCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 42634 0.67 0.594561
Target:  5'- cGCUCucacaGCgGAGUCGCgGCCGaagccgacggCGCCGCc -3'
miRNA:   3'- -CGGGc----CG-CUCAGCGgCGGCa---------GCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 43888 0.69 0.476906
Target:  5'- aCCCGGCc-GUCGCCGgCGUC-UCGUg -3'
miRNA:   3'- cGGGCCGcuCAGCGGCgGCAGcGGCG- -5'
11099 3' -64.3 NC_002794.1 + 44105 0.66 0.660157
Target:  5'- uGCgCCGaCGAG-CGCCGCaucaGcUCGCgGCa -3'
miRNA:   3'- -CG-GGCcGCUCaGCGGCGg---C-AGCGgCG- -5'
11099 3' -64.3 NC_002794.1 + 44256 0.67 0.564832
Target:  5'- uGCCgGGCGGcUCgGCCGCCGgggacggaggaGuCCGCg -3'
miRNA:   3'- -CGGgCCGCUcAG-CGGCGGCag---------C-GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.