miRNA display CGI


Results 1 - 20 of 442 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11099 3' -64.3 NC_002794.1 + 195475 0.68 0.530064
Target:  5'- uGCCCGGac--UCGcCCGCCG-CGCgGCc -3'
miRNA:   3'- -CGGGCCgcucAGC-GGCGGCaGCGgCG- -5'
11099 3' -64.3 NC_002794.1 + 195010 0.7 0.410441
Target:  5'- uGCCgGGCGAacuccucgaaGUCGCgCGCCGccaggugcaUCGUCGUc -3'
miRNA:   3'- -CGGgCCGCU----------CAGCG-GCGGC---------AGCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 194840 0.72 0.328398
Target:  5'- gGCCCGGCGucuccaGCCGCacCGUcugcccgCGCCGCg -3'
miRNA:   3'- -CGGGCCGCucag--CGGCG--GCA-------GCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 194505 0.73 0.271843
Target:  5'- cGCCCGGCccgcGGcccgcgUGCCGCCGgcccagcagCGCCGCc -3'
miRNA:   3'- -CGGGCCGc---UCa-----GCGGCGGCa--------GCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 194401 0.68 0.50318
Target:  5'- cGCCCGGuCGuucgCGuCCGCCacCGCCGUa -3'
miRNA:   3'- -CGGGCC-GCuca-GC-GGCGGcaGCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 194060 0.74 0.254625
Target:  5'- -gCCGcCGAGagCGCCGCCuucGUCGCCGCc -3'
miRNA:   3'- cgGGCcGCUCa-GCGGCGG---CAGCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 194030 0.77 0.161749
Target:  5'- -gCCGGCGccUCGcCCGCCGcCGCCGCc -3'
miRNA:   3'- cgGGCCGCucAGC-GGCGGCaGCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 194002 0.66 0.632033
Target:  5'- cCCCGGCu--UCGCCuucGCgGcCGCCGCc -3'
miRNA:   3'- cGGGCCGcucAGCGG---CGgCaGCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 193943 0.69 0.48559
Target:  5'- gGCuCCGGCcc--CGCCGCCacCGCCGCc -3'
miRNA:   3'- -CG-GGCCGcucaGCGGCGGcaGCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 193875 0.67 0.557456
Target:  5'- cCCCGGgcccCGcGUCGCCcuccaCCGcCGCCGCc -3'
miRNA:   3'- cGGGCC----GCuCAGCGGc----GGCaGCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 193804 0.67 0.603909
Target:  5'- -gCCGGCGcccgcucgucuGG-CGCCGaCgCGUCGCgGCg -3'
miRNA:   3'- cgGGCCGC-----------UCaGCGGC-G-GCAGCGgCG- -5'
11099 3' -64.3 NC_002794.1 + 193748 0.72 0.34295
Target:  5'- gGCuUCGGCGAG-CGaCCGCCGgcccCGCuCGCu -3'
miRNA:   3'- -CG-GGCCGCUCaGC-GGCGGCa---GCG-GCG- -5'
11099 3' -64.3 NC_002794.1 + 193400 0.69 0.476906
Target:  5'- cGCCUcGCGc-UCGCCuccGCCGcCGCCGCc -3'
miRNA:   3'- -CGGGcCGCucAGCGG---CGGCaGCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 193288 0.77 0.165561
Target:  5'- uGCgCCGGU-AGUCGCCGuCCGcuccgCGCCGCa -3'
miRNA:   3'- -CG-GGCCGcUCAGCGGC-GGCa----GCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 193058 0.7 0.402543
Target:  5'- cGCCCGcaccggcuGCGGGcCGUCGCgGgacaGCCGCa -3'
miRNA:   3'- -CGGGC--------CGCUCaGCGGCGgCag--CGGCG- -5'
11099 3' -64.3 NC_002794.1 + 193000 0.69 0.468299
Target:  5'- cGCCCGGCGuGUgcagCGCCaGCggCGUguacaucugcUGCCGCa -3'
miRNA:   3'- -CGGGCCGCuCA----GCGG-CG--GCA----------GCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 192631 0.68 0.530064
Target:  5'- aGUCgGGCGgccgcuccAGccgCGCCGCCGcgCGCuCGCg -3'
miRNA:   3'- -CGGgCCGC--------UCa--GCGGCGGCa-GCG-GCG- -5'
11099 3' -64.3 NC_002794.1 + 192437 0.74 0.24365
Target:  5'- cGgCCGGCGcGUCGCgCGCCucgcaGUCGCgCGCc -3'
miRNA:   3'- -CgGGCCGCuCAGCG-GCGG-----CAGCG-GCG- -5'
11099 3' -64.3 NC_002794.1 + 192313 0.76 0.181628
Target:  5'- cGUCCGcGC---UCGCCGCCGcCGCCGCu -3'
miRNA:   3'- -CGGGC-CGcucAGCGGCGGCaGCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 192221 0.66 0.62265
Target:  5'- aGCgCGaCGAagaagaucggCGCUGCCGUCGCCGa -3'
miRNA:   3'- -CGgGCcGCUca--------GCGGCGGCAGCGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.