miRNA display CGI


Results 21 - 40 of 442 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11099 3' -64.3 NC_002794.1 + 191656 0.66 0.641416
Target:  5'- aGCCCGcCGGGggaCGgCGCCGgcaGCgGCg -3'
miRNA:   3'- -CGGGCcGCUCa--GCgGCGGCag-CGgCG- -5'
11099 3' -64.3 NC_002794.1 + 191193 0.67 0.603909
Target:  5'- cGCCCGGCcgccCGcCCGCuCGcUCGCuCGCu -3'
miRNA:   3'- -CGGGCCGcucaGC-GGCG-GC-AGCG-GCG- -5'
11099 3' -64.3 NC_002794.1 + 190643 0.79 0.107283
Target:  5'- aGCCCGGCGuGUgcaggaucacgucgCGcCCGCCG-CGCCGCc -3'
miRNA:   3'- -CGGGCCGCuCA--------------GC-GGCGGCaGCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 190331 0.68 0.511185
Target:  5'- aGCCCcauGGCGAagaacugcgucagGUCGUCgGCCG-CGCgGCg -3'
miRNA:   3'- -CGGG---CCGCU-------------CAGCGG-CGGCaGCGgCG- -5'
11099 3' -64.3 NC_002794.1 + 189897 0.7 0.402543
Target:  5'- gGCCCGcCGucagCGCCGCCGcgCGaCCGCc -3'
miRNA:   3'- -CGGGCcGCuca-GCGGCGGCa-GC-GGCG- -5'
11099 3' -64.3 NC_002794.1 + 189853 0.75 0.222883
Target:  5'- gGCCgCGGagccGUCGgCGUCGUCGCCGCc -3'
miRNA:   3'- -CGG-GCCgcu-CAGCgGCGGCAGCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 189368 0.66 0.62265
Target:  5'- uGCCCaGGCuGAGccgcUCGCCGCUGU-GCUcgGCc -3'
miRNA:   3'- -CGGG-CCG-CUC----AGCGGCGGCAgCGG--CG- -5'
11099 3' -64.3 NC_002794.1 + 188776 0.69 0.44214
Target:  5'- aGCCCGGUGcAG-CGguagcggccggccCCGCCGagCGCCGUc -3'
miRNA:   3'- -CGGGCCGC-UCaGC-------------GGCGGCa-GCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 188553 0.67 0.563908
Target:  5'- --gCGGCGGGUacugcUGCCGCaCGUgccgacacaacgccCGCCGCu -3'
miRNA:   3'- cggGCCGCUCA-----GCGGCG-GCA--------------GCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 188390 0.68 0.515656
Target:  5'- uCCCGGgcuucucgccgcagaCGGGacCGCCGCCGcaacUGCCGCa -3'
miRNA:   3'- cGGGCC---------------GCUCa-GCGGCGGCa---GCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 188341 0.67 0.603909
Target:  5'- -gCCGGCG-G-CGCCGUCG-CGcCCGUc -3'
miRNA:   3'- cgGGCCGCuCaGCGGCGGCaGC-GGCG- -5'
11099 3' -64.3 NC_002794.1 + 188308 0.77 0.165561
Target:  5'- aCCCGGCccGUCGUCGUcguccuCGUCGCCGCc -3'
miRNA:   3'- cGGGCCGcuCAGCGGCG------GCAGCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 188193 0.67 0.56668
Target:  5'- uGCCgGGaucCGAGUCGaaaccgucguccUCGUCGUCGUCGUc -3'
miRNA:   3'- -CGGgCC---GCUCAGC------------GGCGGCAGCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 187900 0.7 0.434701
Target:  5'- cGCgCGGUGccgcUCGcCCGCCGggcccCGCCGCg -3'
miRNA:   3'- -CGgGCCGCuc--AGC-GGCGGCa----GCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 187833 0.66 0.647981
Target:  5'- cGCUCGGCucGgcgCGCCgagggcucugcccaGCCGcgcgcggcUCGCCGCu -3'
miRNA:   3'- -CGGGCCGcuCa--GCGG--------------CGGC--------AGCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 187580 0.7 0.402543
Target:  5'- cGCCguCGGCGcg--GCCGCCGUCGCgaCGCc -3'
miRNA:   3'- -CGG--GCCGCucagCGGCGGCAGCG--GCG- -5'
11099 3' -64.3 NC_002794.1 + 187519 0.72 0.335963
Target:  5'- cGCCCGcG-GAGgaacucccCGCCGCCGcgacCGCCGCc -3'
miRNA:   3'- -CGGGC-CgCUCa-------GCGGCGGCa---GCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 187471 0.67 0.56668
Target:  5'- cGCUCGGCGcG-CGCCGggccgaggaCGagGCCGCg -3'
miRNA:   3'- -CGGGCCGCuCaGCGGCg--------GCagCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 186915 0.69 0.451329
Target:  5'- uUCCGGCcccaguAGUgCGCCGCCacCGCCGCc -3'
miRNA:   3'- cGGGCCGc-----UCA-GCGGCGGcaGCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 186841 0.68 0.520142
Target:  5'- cGCCCGacagcgcGCGGG-CGCUGCCGU-GCaGCa -3'
miRNA:   3'- -CGGGC-------CGCUCaGCGGCGGCAgCGgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.