miRNA display CGI


Results 41 - 60 of 442 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11099 3' -64.3 NC_002794.1 + 186642 0.71 0.352907
Target:  5'- aGCCCGcGCGGGUCgGCCGCgCGcaccccguacacggCGcCCGCc -3'
miRNA:   3'- -CGGGC-CGCUCAG-CGGCG-GCa-------------GC-GGCG- -5'
11099 3' -64.3 NC_002794.1 + 186492 0.7 0.402543
Target:  5'- gGCCCGGCGGcgCGCCuCCc-CGCCGUg -3'
miRNA:   3'- -CGGGCCGCUcaGCGGcGGcaGCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 186359 0.75 0.208312
Target:  5'- uGCCCGaCcAGcCGCCGCCGcCGCCGUc -3'
miRNA:   3'- -CGGGCcGcUCaGCGGCGGCaGCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 186276 0.72 0.309061
Target:  5'- cGCCUGGCGcGgcggcacCGCgGCCaggcggccgGUCGCCGCg -3'
miRNA:   3'- -CGGGCCGCuCa------GCGgCGG---------CAGCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 186092 0.89 0.024447
Target:  5'- cGCCgGGCGcuUCGUCGCCGUCGCCGCc -3'
miRNA:   3'- -CGGgCCGCucAGCGGCGGCAGCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 186060 0.71 0.379436
Target:  5'- cCCCGGUccGUgGCCaccGCCGcCGCCGCc -3'
miRNA:   3'- cGGGCCGcuCAgCGG---CGGCaGCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 185219 0.76 0.19457
Target:  5'- cGCCgCGGaGAGUCG-CGCCGacCGCCGCg -3'
miRNA:   3'- -CGG-GCCgCUCAGCgGCGGCa-GCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 185176 0.75 0.213075
Target:  5'- gGCgCGGCGcGGUCGgCGCgGUCGgCGCg -3'
miRNA:   3'- -CGgGCCGC-UCAGCgGCGgCAGCgGCG- -5'
11099 3' -64.3 NC_002794.1 + 185056 0.67 0.603909
Target:  5'- aGCgUGGUcugcAGcCGCCGCggccCGUCGCCGUa -3'
miRNA:   3'- -CGgGCCGc---UCaGCGGCG----GCAGCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 184931 0.68 0.548276
Target:  5'- -gCCGGCG-GUCGuCCuGCCGcagcugCGCCGg -3'
miRNA:   3'- cgGGCCGCuCAGC-GG-CGGCa-----GCGGCg -5'
11099 3' -64.3 NC_002794.1 + 184523 0.72 0.322302
Target:  5'- cGCgCGGCGcGGgcgaCGCCGCCcacCGCCGCc -3'
miRNA:   3'- -CGgGCCGC-UCa---GCGGCGGca-GCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 184192 0.69 0.442971
Target:  5'- cGCCCGGCGAGgC-CCGCUccCGCCc- -3'
miRNA:   3'- -CGGGCCGCUCaGcGGCGGcaGCGGcg -5'
11099 3' -64.3 NC_002794.1 + 183928 0.7 0.410441
Target:  5'- cCCCGGCaGGGUCaCCGCCacgaacGUCGaCGCg -3'
miRNA:   3'- cGGGCCG-CUCAGcGGCGG------CAGCgGCG- -5'
11099 3' -64.3 NC_002794.1 + 183878 0.68 0.50318
Target:  5'- -aCCGcCGAcacCGCCGCCGUcacCGCCGCc -3'
miRNA:   3'- cgGGCcGCUca-GCGGCGGCA---GCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 183671 0.7 0.426522
Target:  5'- gGCCCGaGCGccgacgGGUCGagcgcCCGCCGcgCGCgGCg -3'
miRNA:   3'- -CGGGC-CGC------UCAGC-----GGCGGCa-GCGgCG- -5'
11099 3' -64.3 NC_002794.1 + 183547 0.69 0.48559
Target:  5'- cGCCCGGgGAcacUGCgCGCCGa-GCCGCc -3'
miRNA:   3'- -CGGGCCgCUca-GCG-GCGGCagCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 183505 0.66 0.656413
Target:  5'- aCCCGGCcccgagacccauGUCGCgGCCGU-GCgCGCc -3'
miRNA:   3'- cGGGCCGcu----------CAGCGgCGGCAgCG-GCG- -5'
11099 3' -64.3 NC_002794.1 + 183469 0.69 0.442971
Target:  5'- cGCCCGccGCGAGUcCGCgGCCcgaUCcCCGCg -3'
miRNA:   3'- -CGGGC--CGCUCA-GCGgCGGc--AGcGGCG- -5'
11099 3' -64.3 NC_002794.1 + 183171 0.66 0.62265
Target:  5'- uGCCCGaGCcGGUCGgggaCCGagaCG-CGCCGCc -3'
miRNA:   3'- -CGGGC-CGcUCAGC----GGCg--GCaGCGGCG- -5'
11099 3' -64.3 NC_002794.1 + 182992 0.71 0.379436
Target:  5'- cGgCCGGCGcuUCGCCGCgGgCGCCccGCg -3'
miRNA:   3'- -CgGGCCGCucAGCGGCGgCaGCGG--CG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.