Results 41 - 60 of 442 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11099 | 3' | -64.3 | NC_002794.1 | + | 84070 | 0.66 | 0.669502 |
Target: 5'- -gCCGGaGAcGaCGaCCGCCG-CGCCGCc -3' miRNA: 3'- cgGGCCgCU-CaGC-GGCGGCaGCGGCG- -5' |
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11099 | 3' | -64.3 | NC_002794.1 | + | 127995 | 0.66 | 0.669502 |
Target: 5'- uGUCUgGGCG-GaCGaCCGUCGUCGgCCGCc -3' miRNA: 3'- -CGGG-CCGCuCaGC-GGCGGCAGC-GGCG- -5' |
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11099 | 3' | -64.3 | NC_002794.1 | + | 107060 | 0.66 | 0.669502 |
Target: 5'- --gCGGCGGGcgcggCGCCGCCGgcaUGUCGg -3' miRNA: 3'- cggGCCGCUCa----GCGGCGGCa--GCGGCg -5' |
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11099 | 3' | -64.3 | NC_002794.1 | + | 47961 | 0.66 | 0.669502 |
Target: 5'- gGCgCCGGCuGGG-CGaCCGCCG-CG-CGCu -3' miRNA: 3'- -CG-GGCCG-CUCaGC-GGCGGCaGCgGCG- -5' |
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11099 | 3' | -64.3 | NC_002794.1 | + | 53108 | 0.66 | 0.669502 |
Target: 5'- cCCCGGCG-GUUccggaGCuCG-CGUCGaCCGCg -3' miRNA: 3'- cGGGCCGCuCAG-----CG-GCgGCAGC-GGCG- -5' |
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11099 | 3' | -64.3 | NC_002794.1 | + | 32705 | 0.66 | 0.660157 |
Target: 5'- -gCgGGCGAcUCGCCGCCacccGUCGgCGg -3' miRNA: 3'- cgGgCCGCUcAGCGGCGG----CAGCgGCg -5' |
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11099 | 3' | -64.3 | NC_002794.1 | + | 37536 | 0.66 | 0.660157 |
Target: 5'- cGgCUGGCGAacaGCCGCCGgaggggccaCGaCCGCg -3' miRNA: 3'- -CgGGCCGCUcagCGGCGGCa--------GC-GGCG- -5' |
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11099 | 3' | -64.3 | NC_002794.1 | + | 191656 | 0.66 | 0.641416 |
Target: 5'- aGCCCGcCGGGggaCGgCGCCGgcaGCgGCg -3' miRNA: 3'- -CGGGCcGCUCa--GCgGCGGCag-CGgCG- -5' |
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11099 | 3' | -64.3 | NC_002794.1 | + | 181750 | 0.66 | 0.641416 |
Target: 5'- cGgCCGGCcAGccCGCugaCGCCGauggCGCCGCg -3' miRNA: 3'- -CgGGCCGcUCa-GCG---GCGGCa---GCGGCG- -5' |
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11099 | 3' | -64.3 | NC_002794.1 | + | 187833 | 0.66 | 0.647981 |
Target: 5'- cGCUCGGCucGgcgCGCCgagggcucugcccaGCCGcgcgcggcUCGCCGCu -3' miRNA: 3'- -CGGGCCGcuCa--GCGG--------------CGGC--------AGCGGCG- -5' |
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11099 | 3' | -64.3 | NC_002794.1 | + | 121875 | 0.66 | 0.647981 |
Target: 5'- uGCCaCGGCGAGUUGgggugggugcgguaCUGCgucgacuggaCGUCGcCCGCc -3' miRNA: 3'- -CGG-GCCGCUCAGC--------------GGCG----------GCAGC-GGCG- -5' |
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11099 | 3' | -64.3 | NC_002794.1 | + | 38177 | 0.66 | 0.647981 |
Target: 5'- cGCUCGGCGAcgaaggcguuccugGUC-UCGUCGuUCGCgCGCg -3' miRNA: 3'- -CGGGCCGCU--------------CAGcGGCGGC-AGCG-GCG- -5' |
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11099 | 3' | -64.3 | NC_002794.1 | + | 99805 | 0.66 | 0.650793 |
Target: 5'- cGCgCC-GCGGG-CGCCggcGCCGUCgGCCGa -3' miRNA: 3'- -CG-GGcCGCUCaGCGG---CGGCAG-CGGCg -5' |
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11099 | 3' | -64.3 | NC_002794.1 | + | 116916 | 0.66 | 0.650793 |
Target: 5'- gGUCCGGCGucggcuccggcGUCGUCGgCGUCcCCGg -3' miRNA: 3'- -CGGGCCGCu----------CAGCGGCgGCAGcGGCg -5' |
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11099 | 3' | -64.3 | NC_002794.1 | + | 115185 | 0.66 | 0.650793 |
Target: 5'- gGCCCGGUGccggcGGUCgaGCCGgCGUagCGCCu- -3' miRNA: 3'- -CGGGCCGC-----UCAG--CGGCgGCA--GCGGcg -5' |
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11099 | 3' | -64.3 | NC_002794.1 | + | 128171 | 0.66 | 0.650793 |
Target: 5'- cGCCgCGGaCGGGUCGgUGaccuCGUCgGUCGCg -3' miRNA: 3'- -CGG-GCC-GCUCAGCgGCg---GCAG-CGGCG- -5' |
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11099 | 3' | -64.3 | NC_002794.1 | + | 124487 | 0.66 | 0.650793 |
Target: 5'- cGCCCGGaccgccggaugGAGUCG-CGUCG--GCCGCg -3' miRNA: 3'- -CGGGCCg----------CUCAGCgGCGGCagCGGCG- -5' |
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11099 | 3' | -64.3 | NC_002794.1 | + | 183505 | 0.66 | 0.656413 |
Target: 5'- aCCCGGCcccgagacccauGUCGCgGCCGU-GCgCGCc -3' miRNA: 3'- cGGGCCGcu----------CAGCGgCGGCAgCG-GCG- -5' |
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11099 | 3' | -64.3 | NC_002794.1 | + | 14782 | 0.66 | 0.660157 |
Target: 5'- aGgCCGGCGAG--GCCGgCGUgaCCGCg -3' miRNA: 3'- -CgGGCCGCUCagCGGCgGCAgcGGCG- -5' |
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11099 | 3' | -64.3 | NC_002794.1 | + | 80025 | 0.66 | 0.660157 |
Target: 5'- aGgCCGGgGAGaccacUCGCCgacaguGCCGgcgcgaGCCGCg -3' miRNA: 3'- -CgGGCCgCUC-----AGCGG------CGGCag----CGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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