Results 1 - 5 of 5 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11099 | 5' | -56.1 | NC_002794.1 | + | 136146 | 0.66 | 0.912134 |
Target: 5'- -gGCGAggacGGGGGCGAaGAGgaagUCUUCGGu -3' miRNA: 3'- caCGUU----CCCCCGUUcCUCa---AGAGGCU- -5' |
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11099 | 5' | -56.1 | NC_002794.1 | + | 68475 | 0.67 | 0.886716 |
Target: 5'- -cGCAGuGGGGCAcGGAGgcggCCGAg -3' miRNA: 3'- caCGUUcCCCCGUuCCUCaagaGGCU- -5' |
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11099 | 5' | -56.1 | NC_002794.1 | + | 148172 | 0.69 | 0.781622 |
Target: 5'- ---gGAGGGGGUcgcgacggAAGGAGgggggUCUCCGGc -3' miRNA: 3'- cacgUUCCCCCG--------UUCCUCa----AGAGGCU- -5' |
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11099 | 5' | -56.1 | NC_002794.1 | + | 88067 | 0.73 | 0.593769 |
Target: 5'- -cGCGAGGGGGCGGGGccgcGGUUUgaaCGGg -3' miRNA: 3'- caCGUUCCCCCGUUCC----UCAAGag-GCU- -5' |
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11099 | 5' | -56.1 | NC_002794.1 | + | 171123 | 0.79 | 0.283721 |
Target: 5'- -cGCGAGGGGGCGAGGAcga-UCCGGu -3' miRNA: 3'- caCGUUCCCCCGUUCCUcaagAGGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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