miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
111 3' -56.7 AC_000006.1 + 2722 0.66 0.451807
Target:  5'- uUAugGCUGCuGgaUGGGCGUGGUCGGa -3'
miRNA:   3'- -GUugCGACG-CgaACUCGUGCCGGUCg -5'
111 3' -56.7 AC_000006.1 + 3734 0.67 0.44167
Target:  5'- --cUGCUGCuGC-UGGGCAUguagcucgaGGCCAGUc -3'
miRNA:   3'- guuGCGACG-CGaACUCGUG---------CCGGUCG- -5'
111 3' -56.7 AC_000006.1 + 5053 0.74 0.138678
Target:  5'- aGACGaUGgGCguccAGCGCGGCCAGCg -3'
miRNA:   3'- gUUGCgACgCGaac-UCGUGCCGGUCG- -5'
111 3' -56.7 AC_000006.1 + 6177 0.68 0.36553
Target:  5'- aCggUGgUGCGCUcgucGGGCACGauccugacgcGCCAGCc -3'
miRNA:   3'- -GuuGCgACGCGAa---CUCGUGC----------CGGUCG- -5'
111 3' -56.7 AC_000006.1 + 7486 0.68 0.35667
Target:  5'- gAAUGg-GCGCUcGAgcaGCACGGCCuGCa -3'
miRNA:   3'- gUUGCgaCGCGAaCU---CGUGCCGGuCG- -5'
111 3' -56.7 AC_000006.1 + 8402 0.69 0.298943
Target:  5'- cCggUGUUGCGCccugaGAGCGCuGGCguGCg -3'
miRNA:   3'- -GuuGCGACGCGaa---CUCGUG-CCGguCG- -5'
111 3' -56.7 AC_000006.1 + 9966 0.68 0.347962
Target:  5'- gCGGCgGCUG-GCggUGAGC--GGCCAGCg -3'
miRNA:   3'- -GUUG-CGACgCGa-ACUCGugCCGGUCG- -5'
111 3' -56.7 AC_000006.1 + 10895 0.7 0.269338
Target:  5'- ---aGCUGCGCgaGGGCcuggACcGCCAGCg -3'
miRNA:   3'- guugCGACGCGaaCUCG----UGcCGGUCG- -5'
111 3' -56.7 AC_000006.1 + 11491 0.68 0.36553
Target:  5'- gCAACGaCcGCauccacaagGCcgUGAGCGCGaGCCGGCg -3'
miRNA:   3'- -GUUGC-GaCG---------CGa-ACUCGUGC-CGGUCG- -5'
111 3' -56.7 AC_000006.1 + 11566 0.74 0.146851
Target:  5'- -uGCGCcggGCGCUgguaggGGGCGCcGCCGGCg -3'
miRNA:   3'- guUGCGa--CGCGAa-----CUCGUGcCGGUCG- -5'
111 3' -56.7 AC_000006.1 + 14839 0.72 0.205676
Target:  5'- ---aGCUGCGgaUGAGCugGGaguagaCGGCg -3'
miRNA:   3'- guugCGACGCgaACUCGugCCg-----GUCG- -5'
111 3' -56.7 AC_000006.1 + 15479 0.7 0.276511
Target:  5'- uGGCGCgGCGCagcaGAGCuCGGgCGGCg -3'
miRNA:   3'- gUUGCGaCGCGaa--CUCGuGCCgGUCG- -5'
111 3' -56.7 AC_000006.1 + 15529 0.67 0.412055
Target:  5'- aGugGCgGCGCggc-GCGCGGCUcGCa -3'
miRNA:   3'- gUugCGaCGCGaacuCGUGCCGGuCG- -5'
111 3' -56.7 AC_000006.1 + 16190 0.68 0.3837
Target:  5'- --uCGCccucGCGCUUGAuccCGCGGCuCGGCa -3'
miRNA:   3'- guuGCGa---CGCGAACUc--GUGCCG-GUCG- -5'
111 3' -56.7 AC_000006.1 + 16237 0.72 0.211406
Target:  5'- -cGCGCcgGCGCUUGGGCACcaugaucugcauGGUCGGg -3'
miRNA:   3'- guUGCGa-CGCGAACUCGUG------------CCGGUCg -5'
111 3' -56.7 AC_000006.1 + 16868 0.66 0.46207
Target:  5'- aGGCGcCUGCGCaUG-GCcCGccGCCGGCg -3'
miRNA:   3'- gUUGC-GACGCGaACuCGuGC--CGGUCG- -5'
111 3' -56.7 AC_000006.1 + 17517 0.71 0.242142
Target:  5'- uGGCGCgaugaUGCGCguggUGGGCAUG-CCGGCc -3'
miRNA:   3'- gUUGCG-----ACGCGa---ACUCGUGCcGGUCG- -5'
111 3' -56.7 AC_000006.1 + 18033 0.67 0.431663
Target:  5'- aCAACcggGUGCUaGA-CAUGGCCAGCa -3'
miRNA:   3'- -GUUGcgaCGCGAaCUcGUGCCGGUCG- -5'
111 3' -56.7 AC_000006.1 + 19362 0.68 0.351427
Target:  5'- gGGC-CUGCGCUaccgcuccaugcuucUGGGCaACGGCC-GCu -3'
miRNA:   3'- gUUGcGACGCGA---------------ACUCG-UGCCGGuCG- -5'
111 3' -56.7 AC_000006.1 + 20022 0.74 0.150241
Target:  5'- uCGACGCUGCGCUUGAucucgaacucguucgGCgugaGCagccggucguugccgGGCCAGCu -3'
miRNA:   3'- -GUUGCGACGCGAACU---------------CG----UG---------------CCGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.