Results 1 - 7 of 7 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 1110 | 3' | -48.7 | NC_000940.1 | + | 912 | 0.66 | 0.459776 |
|
Target: 5'- cUGGUggGACAGCCUcUAcACGCCGcAGGCa -3' miRNA: 3'- -ACCG--UUGUCGGA-AUcUGUGGU-UUUGc -5' |
|||||||
| 1110 | 3' | -48.7 | NC_000940.1 | + | 55 | 0.66 | 0.447583 |
|
Target: 5'- gGGCAACuGCCcaaUAGGCAac-GGACGg -3' miRNA: 3'- aCCGUUGuCGGa--AUCUGUgguUUUGC- -5' |
|||||||
| 1110 | 3' | -48.7 | NC_000940.1 | + | 5918 | 0.66 | 0.435572 |
|
Target: 5'- aGGCAcuuuuCAGCUgaGGGCACCAcgcuCGg -3' miRNA: 3'- aCCGUu----GUCGGaaUCUGUGGUuuu-GC- -5' |
|||||||
| 1110 | 3' | -48.7 | NC_000940.1 | + | 6277 | 0.67 | 0.408669 |
|
Target: 5'- aUGGCAguauGCAGCUUUggcaauucccgggcAGACcucaACCAAAACc -3' miRNA: 3'- -ACCGU----UGUCGGAA--------------UCUG----UGGUUUUGc -5' |
|||||||
| 1110 | 3' | -48.7 | NC_000940.1 | + | 5278 | 0.67 | 0.367641 |
|
Target: 5'- gUGGCAACGGCCauuu---CCAGAGCc -3' miRNA: 3'- -ACCGUUGUCGGaaucuguGGUUUUGc -5' |
|||||||
| 1110 | 3' | -48.7 | NC_000940.1 | + | 7243 | 0.69 | 0.307353 |
|
Target: 5'- gUGGCucCAGCCacAGGCACUuuGGCu -3' miRNA: 3'- -ACCGuuGUCGGaaUCUGUGGuuUUGc -5' |
|||||||
| 1110 | 3' | -48.7 | NC_000940.1 | + | 667 | 1.1 | 0.00022 |
|
Target: 5'- aUGGCAACAGCCUUAGACACCAAAACGu -3' miRNA: 3'- -ACCGUUGUCGGAAUCUGUGGUUUUGC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home