miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11100 3' -52.9 NC_002794.1 + 187917 0.66 0.987007
Target:  5'- cCGccGGGcCCCGCCgcgACCGUC-GCg -3'
miRNA:   3'- aGUuuCUC-GGGCGGacaUGGUAGuCG- -5'
11100 3' -52.9 NC_002794.1 + 182495 0.66 0.987007
Target:  5'- cCAAGGGGCCgGUCagGUACgCGU-AGCg -3'
miRNA:   3'- aGUUUCUCGGgCGGa-CAUG-GUAgUCG- -5'
11100 3' -52.9 NC_002794.1 + 145414 0.66 0.987007
Target:  5'- cUUAAAGcgcGGCgCGCC---GCCGUCGGCu -3'
miRNA:   3'- -AGUUUC---UCGgGCGGacaUGGUAGUCG- -5'
11100 3' -52.9 NC_002794.1 + 49378 0.66 0.987007
Target:  5'- -gGAAGaAGCgCGCCaGgccgccGCCGUCGGCc -3'
miRNA:   3'- agUUUC-UCGgGCGGaCa-----UGGUAGUCG- -5'
11100 3' -52.9 NC_002794.1 + 34706 0.66 0.987007
Target:  5'- cCAGcaGGCCCGCCgGcGCCAcgaGGCg -3'
miRNA:   3'- aGUUucUCGGGCGGaCaUGGUag-UCG- -5'
11100 3' -52.9 NC_002794.1 + 156209 0.66 0.985345
Target:  5'- gUCGGAGGGCCgGCgaCUccGCCggCGGCu -3'
miRNA:   3'- -AGUUUCUCGGgCG--GAcaUGGuaGUCG- -5'
11100 3' -52.9 NC_002794.1 + 6884 0.66 0.985345
Target:  5'- -aGAAGAuCCCcCCcgaGUGCCAUCGGUg -3'
miRNA:   3'- agUUUCUcGGGcGGa--CAUGGUAGUCG- -5'
11100 3' -52.9 NC_002794.1 + 192674 0.66 0.985345
Target:  5'- cUCGAAGcGCCgGCCgccgucGUACgucuUCAGCa -3'
miRNA:   3'- -AGUUUCuCGGgCGGa-----CAUGgu--AGUCG- -5'
11100 3' -52.9 NC_002794.1 + 189840 0.66 0.985345
Target:  5'- aCAGcGGGGUCUcgGCCgcgGaGCCGUCGGCg -3'
miRNA:   3'- aGUU-UCUCGGG--CGGa--CaUGGUAGUCG- -5'
11100 3' -52.9 NC_002794.1 + 13903 0.66 0.983525
Target:  5'- uUCGucuuGAGUCUGCuCUGcACCGUCgcGGCg -3'
miRNA:   3'- -AGUuu--CUCGGGCG-GACaUGGUAG--UCG- -5'
11100 3' -52.9 NC_002794.1 + 91270 0.66 0.983525
Target:  5'- uUCGuGGAccgGCgCgGCCUGUACgUGUCGGCg -3'
miRNA:   3'- -AGUuUCU---CG-GgCGGACAUG-GUAGUCG- -5'
11100 3' -52.9 NC_002794.1 + 194065 0.66 0.983525
Target:  5'- --cGAGAGCgCCGCCUucGUcgccgccaccGCCGUguGCc -3'
miRNA:   3'- aguUUCUCG-GGCGGA--CA----------UGGUAguCG- -5'
11100 3' -52.9 NC_002794.1 + 154056 0.66 0.981539
Target:  5'- gCAGGGG---CGCCUGUGCauCAUCGGCa -3'
miRNA:   3'- aGUUUCUcggGCGGACAUG--GUAGUCG- -5'
11100 3' -52.9 NC_002794.1 + 38226 0.66 0.981539
Target:  5'- aCAGAuaGGUCCGCCgcaagACCcgCAGCg -3'
miRNA:   3'- aGUUUc-UCGGGCGGaca--UGGuaGUCG- -5'
11100 3' -52.9 NC_002794.1 + 101594 0.66 0.981539
Target:  5'- cCGGGGgggcgggugccGGCCCGCCgggcggggGUGCCGUUucguccgcgAGCg -3'
miRNA:   3'- aGUUUC-----------UCGGGCGGa-------CAUGGUAG---------UCG- -5'
11100 3' -52.9 NC_002794.1 + 38560 0.66 0.981539
Target:  5'- cCAGA-AGCCCGCCgGcGCCucgacggaGUCGGCc -3'
miRNA:   3'- aGUUUcUCGGGCGGaCaUGG--------UAGUCG- -5'
11100 3' -52.9 NC_002794.1 + 127076 0.66 0.981539
Target:  5'- -gAGAGcGCCCGCCgg-ACCGgcuggagagCGGCg -3'
miRNA:   3'- agUUUCuCGGGCGGacaUGGUa--------GUCG- -5'
11100 3' -52.9 NC_002794.1 + 42695 0.66 0.979379
Target:  5'- cCGgcGAGCCCGCCUGaaacaACgUGUgGGCg -3'
miRNA:   3'- aGUuuCUCGGGCGGACa----UG-GUAgUCG- -5'
11100 3' -52.9 NC_002794.1 + 105496 0.66 0.979379
Target:  5'- gUCGuGGAGCcgCCGCCgccgGUcgcGCCGUCcgaAGCg -3'
miRNA:   3'- -AGUuUCUCG--GGCGGa---CA---UGGUAG---UCG- -5'
11100 3' -52.9 NC_002794.1 + 140266 0.66 0.978696
Target:  5'- -aGGAGAGCUCGCCgcgaugACCGcguuuuugggccucUCGGCc -3'
miRNA:   3'- agUUUCUCGGGCGGaca---UGGU--------------AGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.