miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11100 3' -52.9 NC_002794.1 + 100033 0.79 0.436703
Target:  5'- gCAGAGucuGCacgaCCGCCUGUACCGgcUCAGCg -3'
miRNA:   3'- aGUUUCu--CG----GGCGGACAUGGU--AGUCG- -5'
11100 3' -52.9 NC_002794.1 + 72571 0.74 0.696383
Target:  5'- -gGAAGAGCCCGCCcaacaGcGCguUCAGCg -3'
miRNA:   3'- agUUUCUCGGGCGGa----CaUGguAGUCG- -5'
11100 3' -52.9 NC_002794.1 + 189881 0.72 0.802869
Target:  5'- cCGAccGGCCCGCUcgGgcccGCCGUCAGCg -3'
miRNA:   3'- aGUUucUCGGGCGGa-Ca---UGGUAGUCG- -5'
11100 3' -52.9 NC_002794.1 + 187564 0.72 0.802869
Target:  5'- cCGucGGGCCCGUacccGCCGUCGGCg -3'
miRNA:   3'- aGUuuCUCGGGCGgacaUGGUAGUCG- -5'
11100 3' -52.9 NC_002794.1 + 96342 0.72 0.810902
Target:  5'- cUCAAGGAggaucugGUCCGCCUG-GCCGagGGCa -3'
miRNA:   3'- -AGUUUCU-------CGGGCGGACaUGGUagUCG- -5'
11100 3' -52.9 NC_002794.1 + 112330 0.72 0.811787
Target:  5'- gCGGGGAGCgCGCCg--GCCggCGGCg -3'
miRNA:   3'- aGUUUCUCGgGCGGacaUGGuaGUCG- -5'
11100 3' -52.9 NC_002794.1 + 142979 0.72 0.819671
Target:  5'- gUCGAGGGgcugcguGCCCGCCgugGCCAggaacccggUCAGCg -3'
miRNA:   3'- -AGUUUCU-------CGGGCGGacaUGGU---------AGUCG- -5'
11100 3' -52.9 NC_002794.1 + 113680 0.72 0.820538
Target:  5'- --cGAGcaGGCCCGCC---ACCGUCGGCa -3'
miRNA:   3'- aguUUC--UCGGGCGGacaUGGUAGUCG- -5'
11100 3' -52.9 NC_002794.1 + 14155 0.72 0.826561
Target:  5'- gUCGucGAGCCCcgccGCCUGaACCugcgccuccgagacGUCAGCg -3'
miRNA:   3'- -AGUuuCUCGGG----CGGACaUGG--------------UAGUCG- -5'
11100 3' -52.9 NC_002794.1 + 5787 0.72 0.829115
Target:  5'- -gAGAGAGCCgggGUCUG-ACCGUCGGUg -3'
miRNA:   3'- agUUUCUCGGg--CGGACaUGGUAGUCG- -5'
11100 3' -52.9 NC_002794.1 + 187055 0.72 0.829115
Target:  5'- cCGGAGcccgcGGCCCGCCagGUGCCGcaGGCu -3'
miRNA:   3'- aGUUUC-----UCGGGCGGa-CAUGGUagUCG- -5'
11100 3' -52.9 NC_002794.1 + 182454 0.71 0.853717
Target:  5'- cUCGGAGAGCgCGgCgGUGCgcggCGUCAGCa -3'
miRNA:   3'- -AGUUUCUCGgGCgGaCAUG----GUAGUCG- -5'
11100 3' -52.9 NC_002794.1 + 47731 0.71 0.861518
Target:  5'- aCGAAGcAGCCCGCCggGU-CCAcguggCGGCc -3'
miRNA:   3'- aGUUUC-UCGGGCGGa-CAuGGUa----GUCG- -5'
11100 3' -52.9 NC_002794.1 + 34029 0.71 0.861518
Target:  5'- aUCGAccAGAG-CCGCCUGcUGCCGggcCGGCc -3'
miRNA:   3'- -AGUU--UCUCgGGCGGAC-AUGGUa--GUCG- -5'
11100 3' -52.9 NC_002794.1 + 98954 0.7 0.883627
Target:  5'- ---uGGGGCUCGUgCUGggcGCCGUCGGCg -3'
miRNA:   3'- aguuUCUCGGGCG-GACa--UGGUAGUCG- -5'
11100 3' -52.9 NC_002794.1 + 79863 0.7 0.890549
Target:  5'- gCGAAGAGuCCCG-CUGgcCCGaCAGCa -3'
miRNA:   3'- aGUUUCUC-GGGCgGACauGGUaGUCG- -5'
11100 3' -52.9 NC_002794.1 + 95093 0.7 0.897239
Target:  5'- aCGAGGAGCUgGCCgcgGUgcccaACCAagGGCg -3'
miRNA:   3'- aGUUUCUCGGgCGGa--CA-----UGGUagUCG- -5'
11100 3' -52.9 NC_002794.1 + 179655 0.7 0.897239
Target:  5'- gUCAGGcGGGCUCGCCggacgGcACCcgCGGCg -3'
miRNA:   3'- -AGUUU-CUCGGGCGGa----CaUGGuaGUCG- -5'
11100 3' -52.9 NC_002794.1 + 90672 0.7 0.909297
Target:  5'- ---uGGGGCCgGCCgcguggcuguucgUGUGCCcgCGGCa -3'
miRNA:   3'- aguuUCUCGGgCGG-------------ACAUGGuaGUCG- -5'
11100 3' -52.9 NC_002794.1 + 138361 0.69 0.921615
Target:  5'- ----cGAGCgauCUGCUUGUACCGgUCGGCg -3'
miRNA:   3'- aguuuCUCG---GGCGGACAUGGU-AGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.