miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11100 3' -52.9 NC_002794.1 + 138361 0.69 0.921615
Target:  5'- ----cGAGCgauCUGCUUGUACCGgUCGGCg -3'
miRNA:   3'- aguuuCUCG---GGCGGACAUGGU-AGUCG- -5'
11100 3' -52.9 NC_002794.1 + 190005 0.69 0.932346
Target:  5'- cCAucG-GCCCGUCcggGU-CCAUCGGCg -3'
miRNA:   3'- aGUuuCuCGGGCGGa--CAuGGUAGUCG- -5'
11100 3' -52.9 NC_002794.1 + 109649 0.69 0.932346
Target:  5'- aUCGGAGGGCUCGCUcGUcgGCUAgUUAGCu -3'
miRNA:   3'- -AGUUUCUCGGGCGGaCA--UGGU-AGUCG- -5'
11100 3' -52.9 NC_002794.1 + 122299 0.69 0.937346
Target:  5'- gCGAGGAguGCCCGCUg--GCCGUCGccguGCg -3'
miRNA:   3'- aGUUUCU--CGGGCGGacaUGGUAGU----CG- -5'
11100 3' -52.9 NC_002794.1 + 14354 0.68 0.946621
Target:  5'- cCGAGGAGUcuuaCCGCUgcGUGCUGUCGGUc -3'
miRNA:   3'- aGUUUCUCG----GGCGGa-CAUGGUAGUCG- -5'
11100 3' -52.9 NC_002794.1 + 98142 0.68 0.954941
Target:  5'- aUCGGAGAGauaCCGCC---GCCAUCGccGCu -3'
miRNA:   3'- -AGUUUCUCg--GGCGGacaUGGUAGU--CG- -5'
11100 3' -52.9 NC_002794.1 + 78026 0.68 0.958752
Target:  5'- -gGGAGAacGCCCGCCgccgcccucGCCGUCAGa -3'
miRNA:   3'- agUUUCU--CGGGCGGaca------UGGUAGUCg -5'
11100 3' -52.9 NC_002794.1 + 90229 0.68 0.958752
Target:  5'- ---cGGAGcCCCGCCUGUGgucCCcgCGcGCg -3'
miRNA:   3'- aguuUCUC-GGGCGGACAU---GGuaGU-CG- -5'
11100 3' -52.9 NC_002794.1 + 186715 0.68 0.962336
Target:  5'- -uGAAGAGCCCGUCgcUGCUA-UAGCu -3'
miRNA:   3'- agUUUCUCGGGCGGacAUGGUaGUCG- -5'
11100 3' -52.9 NC_002794.1 + 47393 0.67 0.965697
Target:  5'- cCGAGcccGAGCCCgaaGCC---GCCGUCGGCg -3'
miRNA:   3'- aGUUU---CUCGGG---CGGacaUGGUAGUCG- -5'
11100 3' -52.9 NC_002794.1 + 49633 0.67 0.965697
Target:  5'- ------cGCCCGCCccucuaACCGUCGGCg -3'
miRNA:   3'- aguuucuCGGGCGGaca---UGGUAGUCG- -5'
11100 3' -52.9 NC_002794.1 + 77380 0.67 0.968537
Target:  5'- aCAAGucGAGCgCCGCucacuacCUG-GCCGUCGGCg -3'
miRNA:   3'- aGUUU--CUCG-GGCG-------GACaUGGUAGUCG- -5'
11100 3' -52.9 NC_002794.1 + 90292 0.67 0.968841
Target:  5'- ----cGAGCUCGCCgacGUuCCGUUGGCu -3'
miRNA:   3'- aguuuCUCGGGCGGa--CAuGGUAGUCG- -5'
11100 3' -52.9 NC_002794.1 + 37403 0.67 0.968841
Target:  5'- gUAGAGcGCCCGCUgcaGCCGgucCAGCg -3'
miRNA:   3'- aGUUUCuCGGGCGGacaUGGUa--GUCG- -5'
11100 3' -52.9 NC_002794.1 + 155500 0.67 0.968841
Target:  5'- -aAGAGAGCCgaaaccgggcCGCCUGUuCCAgUCGGg -3'
miRNA:   3'- agUUUCUCGG----------GCGGACAuGGU-AGUCg -5'
11100 3' -52.9 NC_002794.1 + 89217 0.67 0.968841
Target:  5'- gCGAAGGGagCCGCCcGUGCaCAuugaacUCGGCg -3'
miRNA:   3'- aGUUUCUCg-GGCGGaCAUG-GU------AGUCG- -5'
11100 3' -52.9 NC_002794.1 + 66821 0.67 0.971775
Target:  5'- gUCAGGGcGCCCGgCgcgacuccgGgcgccGCCGUCGGCg -3'
miRNA:   3'- -AGUUUCuCGGGCgGa--------Ca----UGGUAGUCG- -5'
11100 3' -52.9 NC_002794.1 + 65119 0.67 0.971775
Target:  5'- cCGAGGucGCgCGCCUGU-CCGagcuccUCGGCg -3'
miRNA:   3'- aGUUUCu-CGgGCGGACAuGGU------AGUCG- -5'
11100 3' -52.9 NC_002794.1 + 123231 0.67 0.971775
Target:  5'- ----cGAG-CgGCCUG-GCCAUCAGCc -3'
miRNA:   3'- aguuuCUCgGgCGGACaUGGUAGUCG- -5'
11100 3' -52.9 NC_002794.1 + 130380 0.67 0.971775
Target:  5'- cUCAAccgcuGAGgCCGCCUG-GCUGUCGGa -3'
miRNA:   3'- -AGUUu----CUCgGGCGGACaUGGUAGUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.