Results 61 - 65 of 65 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
11100 | 3' | -52.9 | NC_002794.1 | + | 34706 | 0.66 | 0.987007 |
Target: 5'- cCAGcaGGCCCGCCgGcGCCAcgaGGCg -3' miRNA: 3'- aGUUucUCGGGCGGaCaUGGUag-UCG- -5' |
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11100 | 3' | -52.9 | NC_002794.1 | + | 49378 | 0.66 | 0.987007 |
Target: 5'- -gGAAGaAGCgCGCCaGgccgccGCCGUCGGCc -3' miRNA: 3'- agUUUC-UCGgGCGGaCa-----UGGUAGUCG- -5' |
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11100 | 3' | -52.9 | NC_002794.1 | + | 145414 | 0.66 | 0.987007 |
Target: 5'- cUUAAAGcgcGGCgCGCC---GCCGUCGGCu -3' miRNA: 3'- -AGUUUC---UCGgGCGGacaUGGUAGUCG- -5' |
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11100 | 3' | -52.9 | NC_002794.1 | + | 182495 | 0.66 | 0.987007 |
Target: 5'- cCAAGGGGCCgGUCagGUACgCGU-AGCg -3' miRNA: 3'- aGUUUCUCGGgCGGa-CAUG-GUAgUCG- -5' |
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11100 | 3' | -52.9 | NC_002794.1 | + | 187917 | 0.66 | 0.987007 |
Target: 5'- cCGccGGGcCCCGCCgcgACCGUC-GCg -3' miRNA: 3'- aGUuuCUC-GGGCGGacaUGGUAGuCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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