miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11100 3' -52.9 NC_002794.1 + 5787 0.72 0.829115
Target:  5'- -gAGAGAGCCgggGUCUG-ACCGUCGGUg -3'
miRNA:   3'- agUUUCUCGGg--CGGACaUGGUAGUCG- -5'
11100 3' -52.9 NC_002794.1 + 6884 0.66 0.985345
Target:  5'- -aGAAGAuCCCcCCcgaGUGCCAUCGGUg -3'
miRNA:   3'- agUUUCUcGGGcGGa--CAUGGUAGUCG- -5'
11100 3' -52.9 NC_002794.1 + 13903 0.66 0.983525
Target:  5'- uUCGucuuGAGUCUGCuCUGcACCGUCgcGGCg -3'
miRNA:   3'- -AGUuu--CUCGGGCG-GACaUGGUAG--UCG- -5'
11100 3' -52.9 NC_002794.1 + 14155 0.72 0.826561
Target:  5'- gUCGucGAGCCCcgccGCCUGaACCugcgccuccgagacGUCAGCg -3'
miRNA:   3'- -AGUuuCUCGGG----CGGACaUGG--------------UAGUCG- -5'
11100 3' -52.9 NC_002794.1 + 14354 0.68 0.946621
Target:  5'- cCGAGGAGUcuuaCCGCUgcGUGCUGUCGGUc -3'
miRNA:   3'- aGUUUCUCG----GGCGGa-CAUGGUAGUCG- -5'
11100 3' -52.9 NC_002794.1 + 34029 0.71 0.861518
Target:  5'- aUCGAccAGAG-CCGCCUGcUGCCGggcCGGCc -3'
miRNA:   3'- -AGUU--UCUCgGGCGGAC-AUGGUa--GUCG- -5'
11100 3' -52.9 NC_002794.1 + 34706 0.66 0.987007
Target:  5'- cCAGcaGGCCCGCCgGcGCCAcgaGGCg -3'
miRNA:   3'- aGUUucUCGGGCGGaCaUGGUag-UCG- -5'
11100 3' -52.9 NC_002794.1 + 37403 0.67 0.968841
Target:  5'- gUAGAGcGCCCGCUgcaGCCGgucCAGCg -3'
miRNA:   3'- aGUUUCuCGGGCGGacaUGGUa--GUCG- -5'
11100 3' -52.9 NC_002794.1 + 38226 0.66 0.981539
Target:  5'- aCAGAuaGGUCCGCCgcaagACCcgCAGCg -3'
miRNA:   3'- aGUUUc-UCGGGCGGaca--UGGuaGUCG- -5'
11100 3' -52.9 NC_002794.1 + 38560 0.66 0.981539
Target:  5'- cCAGA-AGCCCGCCgGcGCCucgacggaGUCGGCc -3'
miRNA:   3'- aGUUUcUCGGGCGGaCaUGG--------UAGUCG- -5'
11100 3' -52.9 NC_002794.1 + 42695 0.66 0.979379
Target:  5'- cCGgcGAGCCCGCCUGaaacaACgUGUgGGCg -3'
miRNA:   3'- aGUuuCUCGGGCGGACa----UG-GUAgUCG- -5'
11100 3' -52.9 NC_002794.1 + 47393 0.67 0.965697
Target:  5'- cCGAGcccGAGCCCgaaGCC---GCCGUCGGCg -3'
miRNA:   3'- aGUUU---CUCGGG---CGGacaUGGUAGUCG- -5'
11100 3' -52.9 NC_002794.1 + 47731 0.71 0.861518
Target:  5'- aCGAAGcAGCCCGCCggGU-CCAcguggCGGCc -3'
miRNA:   3'- aGUUUC-UCGGGCGGa-CAuGGUa----GUCG- -5'
11100 3' -52.9 NC_002794.1 + 49378 0.66 0.987007
Target:  5'- -gGAAGaAGCgCGCCaGgccgccGCCGUCGGCc -3'
miRNA:   3'- agUUUC-UCGgGCGGaCa-----UGGUAGUCG- -5'
11100 3' -52.9 NC_002794.1 + 49633 0.67 0.965697
Target:  5'- ------cGCCCGCCccucuaACCGUCGGCg -3'
miRNA:   3'- aguuucuCGGGCGGaca---UGGUAGUCG- -5'
11100 3' -52.9 NC_002794.1 + 57535 0.67 0.977037
Target:  5'- gCAAGGAGaaCGCCgucacgGCCAUCGcGCa -3'
miRNA:   3'- aGUUUCUCggGCGGaca---UGGUAGU-CG- -5'
11100 3' -52.9 NC_002794.1 + 62273 0.67 0.974505
Target:  5'- gUCAAgccGGAGCUCgGCCUGcUGCCGcUCcgAGCc -3'
miRNA:   3'- -AGUU---UCUCGGG-CGGAC-AUGGU-AG--UCG- -5'
11100 3' -52.9 NC_002794.1 + 65119 0.67 0.971775
Target:  5'- cCGAGGucGCgCGCCUGU-CCGagcuccUCGGCg -3'
miRNA:   3'- aGUUUCu-CGgGCGGACAuGGU------AGUCG- -5'
11100 3' -52.9 NC_002794.1 + 66821 0.67 0.971775
Target:  5'- gUCAGGGcGCCCGgCgcgacuccgGgcgccGCCGUCGGCg -3'
miRNA:   3'- -AGUUUCuCGGGCgGa--------Ca----UGGUAGUCG- -5'
11100 3' -52.9 NC_002794.1 + 72571 0.74 0.696383
Target:  5'- -gGAAGAGCCCGCCcaacaGcGCguUCAGCg -3'
miRNA:   3'- agUUUCUCGGGCGGa----CaUGguAGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.