miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11100 3' -52.9 NC_002794.1 + 77380 0.67 0.968537
Target:  5'- aCAAGucGAGCgCCGCucacuacCUG-GCCGUCGGCg -3'
miRNA:   3'- aGUUU--CUCG-GGCG-------GACaUGGUAGUCG- -5'
11100 3' -52.9 NC_002794.1 + 78026 0.68 0.958752
Target:  5'- -gGGAGAacGCCCGCCgccgcccucGCCGUCAGa -3'
miRNA:   3'- agUUUCU--CGGGCGGaca------UGGUAGUCg -5'
11100 3' -52.9 NC_002794.1 + 79863 0.7 0.890549
Target:  5'- gCGAAGAGuCCCG-CUGgcCCGaCAGCa -3'
miRNA:   3'- aGUUUCUC-GGGCgGACauGGUaGUCG- -5'
11100 3' -52.9 NC_002794.1 + 82456 0.67 0.977037
Target:  5'- aCGGucGGCCCGaCCUcgacGCCGUCGGCc -3'
miRNA:   3'- aGUUucUCGGGC-GGAca--UGGUAGUCG- -5'
11100 3' -52.9 NC_002794.1 + 89217 0.67 0.968841
Target:  5'- gCGAAGGGagCCGCCcGUGCaCAuugaacUCGGCg -3'
miRNA:   3'- aGUUUCUCg-GGCGGaCAUG-GU------AGUCG- -5'
11100 3' -52.9 NC_002794.1 + 90229 0.68 0.958752
Target:  5'- ---cGGAGcCCCGCCUGUGgucCCcgCGcGCg -3'
miRNA:   3'- aguuUCUC-GGGCGGACAU---GGuaGU-CG- -5'
11100 3' -52.9 NC_002794.1 + 90292 0.67 0.968841
Target:  5'- ----cGAGCUCGCCgacGUuCCGUUGGCu -3'
miRNA:   3'- aguuuCUCGGGCGGa--CAuGGUAGUCG- -5'
11100 3' -52.9 NC_002794.1 + 90672 0.7 0.909297
Target:  5'- ---uGGGGCCgGCCgcguggcuguucgUGUGCCcgCGGCa -3'
miRNA:   3'- aguuUCUCGGgCGG-------------ACAUGGuaGUCG- -5'
11100 3' -52.9 NC_002794.1 + 91270 0.66 0.983525
Target:  5'- uUCGuGGAccgGCgCgGCCUGUACgUGUCGGCg -3'
miRNA:   3'- -AGUuUCU---CG-GgCGGACAUG-GUAGUCG- -5'
11100 3' -52.9 NC_002794.1 + 95093 0.7 0.897239
Target:  5'- aCGAGGAGCUgGCCgcgGUgcccaACCAagGGCg -3'
miRNA:   3'- aGUUUCUCGGgCGGa--CA-----UGGUagUCG- -5'
11100 3' -52.9 NC_002794.1 + 96342 0.72 0.810902
Target:  5'- cUCAAGGAggaucugGUCCGCCUG-GCCGagGGCa -3'
miRNA:   3'- -AGUUUCU-------CGGGCGGACaUGGUagUCG- -5'
11100 3' -52.9 NC_002794.1 + 98142 0.68 0.954941
Target:  5'- aUCGGAGAGauaCCGCC---GCCAUCGccGCu -3'
miRNA:   3'- -AGUUUCUCg--GGCGGacaUGGUAGU--CG- -5'
11100 3' -52.9 NC_002794.1 + 98954 0.7 0.883627
Target:  5'- ---uGGGGCUCGUgCUGggcGCCGUCGGCg -3'
miRNA:   3'- aguuUCUCGGGCG-GACa--UGGUAGUCG- -5'
11100 3' -52.9 NC_002794.1 + 100033 0.79 0.436703
Target:  5'- gCAGAGucuGCacgaCCGCCUGUACCGgcUCAGCg -3'
miRNA:   3'- aGUUUCu--CG----GGCGGACAUGGU--AGUCG- -5'
11100 3' -52.9 NC_002794.1 + 101594 0.66 0.981539
Target:  5'- cCGGGGgggcgggugccGGCCCGCCgggcggggGUGCCGUUucguccgcgAGCg -3'
miRNA:   3'- aGUUUC-----------UCGGGCGGa-------CAUGGUAG---------UCG- -5'
11100 3' -52.9 NC_002794.1 + 105496 0.66 0.979379
Target:  5'- gUCGuGGAGCcgCCGCCgccgGUcgcGCCGUCcgaAGCg -3'
miRNA:   3'- -AGUuUCUCG--GGCGGa---CA---UGGUAG---UCG- -5'
11100 3' -52.9 NC_002794.1 + 109649 0.69 0.932346
Target:  5'- aUCGGAGGGCUCGCUcGUcgGCUAgUUAGCu -3'
miRNA:   3'- -AGUUUCUCGGGCGGaCA--UGGU-AGUCG- -5'
11100 3' -52.9 NC_002794.1 + 112330 0.72 0.811787
Target:  5'- gCGGGGAGCgCGCCg--GCCggCGGCg -3'
miRNA:   3'- aGUUUCUCGgGCGGacaUGGuaGUCG- -5'
11100 3' -52.9 NC_002794.1 + 113680 0.72 0.820538
Target:  5'- --cGAGcaGGCCCGCC---ACCGUCGGCa -3'
miRNA:   3'- aguUUC--UCGGGCGGacaUGGUAGUCG- -5'
11100 3' -52.9 NC_002794.1 + 122299 0.69 0.937346
Target:  5'- gCGAGGAguGCCCGCUg--GCCGUCGccguGCg -3'
miRNA:   3'- aGUUUCU--CGGGCGGacaUGGUAGU----CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.