miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11100 3' -52.9 NC_002794.1 + 194065 0.66 0.983525
Target:  5'- --cGAGAGCgCCGCCUucGUcgccgccaccGCCGUguGCc -3'
miRNA:   3'- aguUUCUCG-GGCGGA--CA----------UGGUAguCG- -5'
11100 3' -52.9 NC_002794.1 + 192674 0.66 0.985345
Target:  5'- cUCGAAGcGCCgGCCgccgucGUACgucuUCAGCa -3'
miRNA:   3'- -AGUUUCuCGGgCGGa-----CAUGgu--AGUCG- -5'
11100 3' -52.9 NC_002794.1 + 190005 0.69 0.932346
Target:  5'- cCAucG-GCCCGUCcggGU-CCAUCGGCg -3'
miRNA:   3'- aGUuuCuCGGGCGGa--CAuGGUAGUCG- -5'
11100 3' -52.9 NC_002794.1 + 189881 0.72 0.802869
Target:  5'- cCGAccGGCCCGCUcgGgcccGCCGUCAGCg -3'
miRNA:   3'- aGUUucUCGGGCGGa-Ca---UGGUAGUCG- -5'
11100 3' -52.9 NC_002794.1 + 189840 0.66 0.985345
Target:  5'- aCAGcGGGGUCUcgGCCgcgGaGCCGUCGGCg -3'
miRNA:   3'- aGUU-UCUCGGG--CGGa--CaUGGUAGUCG- -5'
11100 3' -52.9 NC_002794.1 + 187917 0.66 0.987007
Target:  5'- cCGccGGGcCCCGCCgcgACCGUC-GCg -3'
miRNA:   3'- aGUuuCUC-GGGCGGacaUGGUAGuCG- -5'
11100 3' -52.9 NC_002794.1 + 187564 0.72 0.802869
Target:  5'- cCGucGGGCCCGUacccGCCGUCGGCg -3'
miRNA:   3'- aGUuuCUCGGGCGgacaUGGUAGUCG- -5'
11100 3' -52.9 NC_002794.1 + 187055 0.72 0.829115
Target:  5'- cCGGAGcccgcGGCCCGCCagGUGCCGcaGGCu -3'
miRNA:   3'- aGUUUC-----UCGGGCGGa-CAUGGUagUCG- -5'
11100 3' -52.9 NC_002794.1 + 186715 0.68 0.962336
Target:  5'- -uGAAGAGCCCGUCgcUGCUA-UAGCu -3'
miRNA:   3'- agUUUCUCGGGCGGacAUGGUaGUCG- -5'
11100 3' -52.9 NC_002794.1 + 182495 0.66 0.987007
Target:  5'- cCAAGGGGCCgGUCagGUACgCGU-AGCg -3'
miRNA:   3'- aGUUUCUCGGgCGGa-CAUG-GUAgUCG- -5'
11100 3' -52.9 NC_002794.1 + 182454 0.71 0.853717
Target:  5'- cUCGGAGAGCgCGgCgGUGCgcggCGUCAGCa -3'
miRNA:   3'- -AGUUUCUCGgGCgGaCAUG----GUAGUCG- -5'
11100 3' -52.9 NC_002794.1 + 179655 0.7 0.897239
Target:  5'- gUCAGGcGGGCUCGCCggacgGcACCcgCGGCg -3'
miRNA:   3'- -AGUUU-CUCGGGCGGa----CaUGGuaGUCG- -5'
11100 3' -52.9 NC_002794.1 + 156209 0.66 0.985345
Target:  5'- gUCGGAGGGCCgGCgaCUccGCCggCGGCu -3'
miRNA:   3'- -AGUUUCUCGGgCG--GAcaUGGuaGUCG- -5'
11100 3' -52.9 NC_002794.1 + 155500 0.67 0.968841
Target:  5'- -aAGAGAGCCgaaaccgggcCGCCUGUuCCAgUCGGg -3'
miRNA:   3'- agUUUCUCGG----------GCGGACAuGGU-AGUCg -5'
11100 3' -52.9 NC_002794.1 + 154056 0.66 0.981539
Target:  5'- gCAGGGG---CGCCUGUGCauCAUCGGCa -3'
miRNA:   3'- aGUUUCUcggGCGGACAUG--GUAGUCG- -5'
11100 3' -52.9 NC_002794.1 + 146982 0.67 0.977037
Target:  5'- gCGAGGucGGCgCCGCCg--GCCgacGUCGGCg -3'
miRNA:   3'- aGUUUC--UCG-GGCGGacaUGG---UAGUCG- -5'
11100 3' -52.9 NC_002794.1 + 145414 0.66 0.987007
Target:  5'- cUUAAAGcgcGGCgCGCC---GCCGUCGGCu -3'
miRNA:   3'- -AGUUUC---UCGgGCGGacaUGGUAGUCG- -5'
11100 3' -52.9 NC_002794.1 + 142979 0.72 0.819671
Target:  5'- gUCGAGGGgcugcguGCCCGCCgugGCCAggaacccggUCAGCg -3'
miRNA:   3'- -AGUUUCU-------CGGGCGGacaUGGU---------AGUCG- -5'
11100 3' -52.9 NC_002794.1 + 140266 0.66 0.978696
Target:  5'- -aGGAGAGCUCGCCgcgaugACCGcguuuuugggccucUCGGCc -3'
miRNA:   3'- agUUUCUCGGGCGGaca---UGGU--------------AGUCG- -5'
11100 3' -52.9 NC_002794.1 + 138361 0.69 0.921615
Target:  5'- ----cGAGCgauCUGCUUGUACCGgUCGGCg -3'
miRNA:   3'- aguuuCUCG---GGCGGACAUGGU-AGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.