miRNA display CGI


Results 41 - 60 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11100 3' -52.9 NC_002794.1 + 189840 0.66 0.985345
Target:  5'- aCAGcGGGGUCUcgGCCgcgGaGCCGUCGGCg -3'
miRNA:   3'- aGUU-UCUCGGG--CGGa--CaUGGUAGUCG- -5'
11100 3' -52.9 NC_002794.1 + 34706 0.66 0.987007
Target:  5'- cCAGcaGGCCCGCCgGcGCCAcgaGGCg -3'
miRNA:   3'- aGUUucUCGGGCGGaCaUGGUag-UCG- -5'
11100 3' -52.9 NC_002794.1 + 49378 0.66 0.987007
Target:  5'- -gGAAGaAGCgCGCCaGgccgccGCCGUCGGCc -3'
miRNA:   3'- agUUUC-UCGgGCGGaCa-----UGGUAGUCG- -5'
11100 3' -52.9 NC_002794.1 + 145414 0.66 0.987007
Target:  5'- cUUAAAGcgcGGCgCGCC---GCCGUCGGCu -3'
miRNA:   3'- -AGUUUC---UCGgGCGGacaUGGUAGUCG- -5'
11100 3' -52.9 NC_002794.1 + 182495 0.66 0.987007
Target:  5'- cCAAGGGGCCgGUCagGUACgCGU-AGCg -3'
miRNA:   3'- aGUUUCUCGGgCGGa-CAUG-GUAgUCG- -5'
11100 3' -52.9 NC_002794.1 + 101594 0.66 0.981539
Target:  5'- cCGGGGgggcgggugccGGCCCGCCgggcggggGUGCCGUUucguccgcgAGCg -3'
miRNA:   3'- aGUUUC-----------UCGGGCGGa-------CAUGGUAG---------UCG- -5'
11100 3' -52.9 NC_002794.1 + 38226 0.66 0.981539
Target:  5'- aCAGAuaGGUCCGCCgcaagACCcgCAGCg -3'
miRNA:   3'- aGUUUc-UCGGGCGGaca--UGGuaGUCG- -5'
11100 3' -52.9 NC_002794.1 + 66821 0.67 0.971775
Target:  5'- gUCAGGGcGCCCGgCgcgacuccgGgcgccGCCGUCGGCg -3'
miRNA:   3'- -AGUUUCuCGGGCgGa--------Ca----UGGUAGUCG- -5'
11100 3' -52.9 NC_002794.1 + 65119 0.67 0.971775
Target:  5'- cCGAGGucGCgCGCCUGU-CCGagcuccUCGGCg -3'
miRNA:   3'- aGUUUCu-CGgGCGGACAuGGU------AGUCG- -5'
11100 3' -52.9 NC_002794.1 + 123231 0.67 0.971775
Target:  5'- ----cGAG-CgGCCUG-GCCAUCAGCc -3'
miRNA:   3'- aguuuCUCgGgCGGACaUGGUAGUCG- -5'
11100 3' -52.9 NC_002794.1 + 130380 0.67 0.971775
Target:  5'- cUCAAccgcuGAGgCCGCCUG-GCUGUCGGa -3'
miRNA:   3'- -AGUUu----CUCgGGCGGACaUGGUAGUCg -5'
11100 3' -52.9 NC_002794.1 + 62273 0.67 0.974505
Target:  5'- gUCAAgccGGAGCUCgGCCUGcUGCCGcUCcgAGCc -3'
miRNA:   3'- -AGUU---UCUCGGG-CGGAC-AUGGU-AG--UCG- -5'
11100 3' -52.9 NC_002794.1 + 136536 0.67 0.971775
Target:  5'- gUUGAAGAGCCCGagcaCCggGUACuCGUCucGCa -3'
miRNA:   3'- -AGUUUCUCGGGC----GGa-CAUG-GUAGu-CG- -5'
11100 3' -52.9 NC_002794.1 + 57535 0.67 0.977037
Target:  5'- gCAAGGAGaaCGCCgucacgGCCAUCGcGCa -3'
miRNA:   3'- aGUUUCUCggGCGGaca---UGGUAGU-CG- -5'
11100 3' -52.9 NC_002794.1 + 82456 0.67 0.977037
Target:  5'- aCGGucGGCCCGaCCUcgacGCCGUCGGCc -3'
miRNA:   3'- aGUUucUCGGGC-GGAca--UGGUAGUCG- -5'
11100 3' -52.9 NC_002794.1 + 146982 0.67 0.977037
Target:  5'- gCGAGGucGGCgCCGCCg--GCCgacGUCGGCg -3'
miRNA:   3'- aGUUUC--UCG-GGCGGacaUGG---UAGUCG- -5'
11100 3' -52.9 NC_002794.1 + 140266 0.66 0.978696
Target:  5'- -aGGAGAGCUCGCCgcgaugACCGcguuuuugggccucUCGGCc -3'
miRNA:   3'- agUUUCUCGGGCGGaca---UGGU--------------AGUCG- -5'
11100 3' -52.9 NC_002794.1 + 105496 0.66 0.979379
Target:  5'- gUCGuGGAGCcgCCGCCgccgGUcgcGCCGUCcgaAGCg -3'
miRNA:   3'- -AGUuUCUCG--GGCGGa---CA---UGGUAG---UCG- -5'
11100 3' -52.9 NC_002794.1 + 42695 0.66 0.979379
Target:  5'- cCGgcGAGCCCGCCUGaaacaACgUGUgGGCg -3'
miRNA:   3'- aGUuuCUCGGGCGGACa----UG-GUAgUCG- -5'
11100 3' -52.9 NC_002794.1 + 154056 0.66 0.981539
Target:  5'- gCAGGGG---CGCCUGUGCauCAUCGGCa -3'
miRNA:   3'- aGUUUCUcggGCGGACAUG--GUAGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.