miRNA display CGI


Results 1 - 20 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11100 5' -54.1 NC_002794.1 + 63702 0.65 0.985935
Target:  5'- aCGAcgACGGCGCCGgcgccgcCGGAcCGCCGAUcCa -3'
miRNA:   3'- -GCU--UGCUGCGGU-------GCCU-GUGGUUGaGc -5'
11100 5' -54.1 NC_002794.1 + 66861 0.66 0.985098
Target:  5'- -cGGCGAgGCCGCGGcguGCggcugagccaucgcgGCCGACUCc -3'
miRNA:   3'- gcUUGCUgCGGUGCC---UG---------------UGGUUGAGc -5'
11100 5' -54.1 NC_002794.1 + 69694 0.66 0.984403
Target:  5'- aCGAcaGCGGCGUCACGcacugcaucGGCACCG--UCGa -3'
miRNA:   3'- -GCU--UGCUGCGGUGC---------CUGUGGUugAGC- -5'
11100 5' -54.1 NC_002794.1 + 83152 0.66 0.984403
Target:  5'- -uGACGACgagucaGCUGCGGACGCU--CUCGg -3'
miRNA:   3'- gcUUGCUG------CGGUGCCUGUGGuuGAGC- -5'
11100 5' -54.1 NC_002794.1 + 82574 0.66 0.984403
Target:  5'- gCGAGgcCGACGCCgccgagACGGAgACCcuCUCc -3'
miRNA:   3'- -GCUU--GCUGCGG------UGCCUgUGGuuGAGc -5'
11100 5' -54.1 NC_002794.1 + 126095 0.66 0.984403
Target:  5'- cCGAcCGACuggcuuccgGCCcUGGGCGCCGcGCUCGu -3'
miRNA:   3'- -GCUuGCUG---------CGGuGCCUGUGGU-UGAGC- -5'
11100 5' -54.1 NC_002794.1 + 118669 0.66 0.984403
Target:  5'- gGcGCGACGcCCGCGGccgcCGCCGGCg-- -3'
miRNA:   3'- gCuUGCUGC-GGUGCCu---GUGGUUGagc -5'
11100 5' -54.1 NC_002794.1 + 50789 0.66 0.983313
Target:  5'- uCGGGCGGCGCCuccucgcccggcguCGGGCGcuCCGGCg-- -3'
miRNA:   3'- -GCUUGCUGCGGu-------------GCCUGU--GGUUGagc -5'
11100 5' -54.1 NC_002794.1 + 112621 0.66 0.982555
Target:  5'- uGcGCGuCGuCCACGGGCGgCuuCUCGa -3'
miRNA:   3'- gCuUGCuGC-GGUGCCUGUgGuuGAGC- -5'
11100 5' -54.1 NC_002794.1 + 49688 0.66 0.982555
Target:  5'- gCGGACGA-GUCGCGucGGCACgaCGACUCGc -3'
miRNA:   3'- -GCUUGCUgCGGUGC--CUGUG--GUUGAGC- -5'
11100 5' -54.1 NC_002794.1 + 116635 0.66 0.982555
Target:  5'- aGAGCGGCagggGCC-CGGcCGuCCGGCUCu -3'
miRNA:   3'- gCUUGCUG----CGGuGCCuGU-GGUUGAGc -5'
11100 5' -54.1 NC_002794.1 + 127611 0.66 0.982555
Target:  5'- uGAGCGGCGCgGacCGGACucgucgucgacGCCGACgacCGa -3'
miRNA:   3'- gCUUGCUGCGgU--GCCUG-----------UGGUUGa--GC- -5'
11100 5' -54.1 NC_002794.1 + 21701 0.66 0.982555
Target:  5'- cCGccuCGGCGuCCACGGGCGCUGcgUCGc -3'
miRNA:   3'- -GCuu-GCUGC-GGUGCCUGUGGUugAGC- -5'
11100 5' -54.1 NC_002794.1 + 138406 0.66 0.982555
Target:  5'- uCGAG-GuCGUCGcCGGcCGCCGACUCGu -3'
miRNA:   3'- -GCUUgCuGCGGU-GCCuGUGGUUGAGC- -5'
11100 5' -54.1 NC_002794.1 + 109329 0.66 0.982555
Target:  5'- cCGGGCGcuACGCCAagauGCACCAGCUg- -3'
miRNA:   3'- -GCUUGC--UGCGGUgcc-UGUGGUUGAgc -5'
11100 5' -54.1 NC_002794.1 + 157201 0.66 0.982555
Target:  5'- cCGAugGAgacaggucCG-CACGGACACCAccaAgUCGg -3'
miRNA:   3'- -GCUugCU--------GCgGUGCCUGUGGU---UgAGC- -5'
11100 5' -54.1 NC_002794.1 + 158429 0.66 0.982555
Target:  5'- aCGAACGcACGCCagGCGGGuuCCGcGCUCu -3'
miRNA:   3'- -GCUUGC-UGCGG--UGCCUguGGU-UGAGc -5'
11100 5' -54.1 NC_002794.1 + 169140 0.66 0.982555
Target:  5'- cCGGuCGGCGCUACGaGucuACACCGACg-- -3'
miRNA:   3'- -GCUuGCUGCGGUGC-C---UGUGGUUGagc -5'
11100 5' -54.1 NC_002794.1 + 182808 0.66 0.982555
Target:  5'- gCGGuCGACagcucguccaGCCGCGG-CACCGACaCGa -3'
miRNA:   3'- -GCUuGCUG----------CGGUGCCuGUGGUUGaGC- -5'
11100 5' -54.1 NC_002794.1 + 185843 0.66 0.982555
Target:  5'- uCGAACGGuagaGCCACaGGGCucGCCgAAUUCGc -3'
miRNA:   3'- -GCUUGCUg---CGGUG-CCUG--UGG-UUGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.