miRNA display CGI


Results 41 - 60 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11100 5' -54.1 NC_002794.1 + 49688 0.66 0.982555
Target:  5'- gCGGACGA-GUCGCGucGGCACgaCGACUCGc -3'
miRNA:   3'- -GCUUGCUgCGGUGC--CUGUG--GUUGAGC- -5'
11100 5' -54.1 NC_002794.1 + 116635 0.66 0.982555
Target:  5'- aGAGCGGCagggGCC-CGGcCGuCCGGCUCu -3'
miRNA:   3'- gCUUGCUG----CGGuGCCuGU-GGUUGAGc -5'
11100 5' -54.1 NC_002794.1 + 127611 0.66 0.982555
Target:  5'- uGAGCGGCGCgGacCGGACucgucgucgacGCCGACgacCGa -3'
miRNA:   3'- gCUUGCUGCGgU--GCCUG-----------UGGUUGa--GC- -5'
11100 5' -54.1 NC_002794.1 + 21701 0.66 0.982555
Target:  5'- cCGccuCGGCGuCCACGGGCGCUGcgUCGc -3'
miRNA:   3'- -GCuu-GCUGC-GGUGCCUGUGGUugAGC- -5'
11100 5' -54.1 NC_002794.1 + 138406 0.66 0.982555
Target:  5'- uCGAG-GuCGUCGcCGGcCGCCGACUCGu -3'
miRNA:   3'- -GCUUgCuGCGGU-GCCuGUGGUUGAGC- -5'
11100 5' -54.1 NC_002794.1 + 109329 0.66 0.982555
Target:  5'- cCGGGCGcuACGCCAagauGCACCAGCUg- -3'
miRNA:   3'- -GCUUGC--UGCGGUgcc-UGUGGUUGAgc -5'
11100 5' -54.1 NC_002794.1 + 107063 0.67 0.97349
Target:  5'- gCGGgcGCGGCGCCGCcGGCaugucggaGCCGACgggCGg -3'
miRNA:   3'- -GCU--UGCUGCGGUGcCUG--------UGGUUGa--GC- -5'
11100 5' -54.1 NC_002794.1 + 6927 0.67 0.97349
Target:  5'- aGAAgcCGcagcCGCCGCGcGGCACCcuCUCGg -3'
miRNA:   3'- gCUU--GCu---GCGGUGC-CUGUGGuuGAGC- -5'
11100 5' -54.1 NC_002794.1 + 85183 0.67 0.97077
Target:  5'- aCGGAcgccCGACGCCcgACGGgggacccuGCGCCcuaAACUCGg -3'
miRNA:   3'- -GCUU----GCUGCGG--UGCC--------UGUGG---UUGAGC- -5'
11100 5' -54.1 NC_002794.1 + 74663 0.67 0.97077
Target:  5'- aCGGACGAgaagagaaacUGCaCGCGGAC-CgAACUCa -3'
miRNA:   3'- -GCUUGCU----------GCG-GUGCCUGuGgUUGAGc -5'
11100 5' -54.1 NC_002794.1 + 94306 0.67 0.97077
Target:  5'- uCGGGCG-CGCCGaugcaaGGACugCAuCUCu -3'
miRNA:   3'- -GCUUGCuGCGGUg-----CCUGugGUuGAGc -5'
11100 5' -54.1 NC_002794.1 + 105955 0.67 0.97077
Target:  5'- aCGAACGGCugggggccGCCGCGGACGaguuuCCGG-UCGc -3'
miRNA:   3'- -GCUUGCUG--------CGGUGCCUGU-----GGUUgAGC- -5'
11100 5' -54.1 NC_002794.1 + 175731 0.67 0.972425
Target:  5'- gGAGCGugGCCGugagagcgagucugUGGACGCUAGugaccguUUCGg -3'
miRNA:   3'- gCUUGCugCGGU--------------GCCUGUGGUU-------GAGC- -5'
11100 5' -54.1 NC_002794.1 + 21374 0.67 0.97349
Target:  5'- gCGGcgGCGGcCGCCGucucuuccuCGGACACCGccgGCUCc -3'
miRNA:   3'- -GCU--UGCU-GCGGU---------GCCUGUGGU---UGAGc -5'
11100 5' -54.1 NC_002794.1 + 14514 0.67 0.97349
Target:  5'- --cGCGGCGCU-CGuGGCGCC-GCUCGg -3'
miRNA:   3'- gcuUGCUGCGGuGC-CUGUGGuUGAGC- -5'
11100 5' -54.1 NC_002794.1 + 57111 0.67 0.97349
Target:  5'- aCGGcCGACGCCAUGGAgCGCggccuggugcaCAACUUc -3'
miRNA:   3'- -GCUuGCUGCGGUGCCU-GUG-----------GUUGAGc -5'
11100 5' -54.1 NC_002794.1 + 23717 0.67 0.97349
Target:  5'- cCGAACcgcGCGCgGCGGGC-CCGACg-- -3'
miRNA:   3'- -GCUUGc--UGCGgUGCCUGuGGUUGagc -5'
11100 5' -54.1 NC_002794.1 + 149856 0.67 0.97349
Target:  5'- gGGACGAgGa-GCGGcCGCCcGCUCGg -3'
miRNA:   3'- gCUUGCUgCggUGCCuGUGGuUGAGC- -5'
11100 5' -54.1 NC_002794.1 + 144911 0.67 0.97349
Target:  5'- uGGGCccCGCCGCcGGCACCAAC-CGc -3'
miRNA:   3'- gCUUGcuGCGGUGcCUGUGGUUGaGC- -5'
11100 5' -54.1 NC_002794.1 + 185254 0.67 0.97077
Target:  5'- aGAAa-GCGCCAgCGGACGCCGccgGC-CGa -3'
miRNA:   3'- gCUUgcUGCGGU-GCCUGUGGU---UGaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.