miRNA display CGI


Results 1 - 20 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11100 5' -54.1 NC_002794.1 + 99798 0.88 0.145861
Target:  5'- aCGAGCGcGCGCCGCGGGCGCCGGCgccgUCGg -3'
miRNA:   3'- -GCUUGC-UGCGGUGCCUGUGGUUG----AGC- -5'
11100 5' -54.1 NC_002794.1 + 64804 0.87 0.165312
Target:  5'- gCGAGCGACGCCGCGGACGgCGGCgagcCGg -3'
miRNA:   3'- -GCUUGCUGCGGUGCCUGUgGUUGa---GC- -5'
11100 5' -54.1 NC_002794.1 + 56904 0.8 0.382683
Target:  5'- cCGcGCGugGCCACGGGCGCCGGgcugccggcCUCGc -3'
miRNA:   3'- -GCuUGCugCGGUGCCUGUGGUU---------GAGC- -5'
11100 5' -54.1 NC_002794.1 + 96985 0.8 0.399154
Target:  5'- gCGAGCG-CGUCACGGGCACCGAgUgGg -3'
miRNA:   3'- -GCUUGCuGCGGUGCCUGUGGUUgAgC- -5'
11100 5' -54.1 NC_002794.1 + 115988 0.8 0.416072
Target:  5'- gGAGCGGCGCCGCGGAgACCGcggagACcgCGg -3'
miRNA:   3'- gCUUGCUGCGGUGCCUgUGGU-----UGa-GC- -5'
11100 5' -54.1 NC_002794.1 + 111749 0.8 0.416072
Target:  5'- uCGAGCuGGCGCCGCGcGGCGCCGucggggcggGCUCGu -3'
miRNA:   3'- -GCUUG-CUGCGGUGC-CUGUGGU---------UGAGC- -5'
11100 5' -54.1 NC_002794.1 + 34857 0.79 0.433421
Target:  5'- gGAGCgGGCGCCGCGGGCGCCGcggACgccgCGa -3'
miRNA:   3'- gCUUG-CUGCGGUGCCUGUGGU---UGa---GC- -5'
11100 5' -54.1 NC_002794.1 + 176549 0.79 0.451184
Target:  5'- uGGGCGACGCgGCGGuGCACCAugUUa -3'
miRNA:   3'- gCUUGCUGCGgUGCC-UGUGGUugAGc -5'
11100 5' -54.1 NC_002794.1 + 191723 0.78 0.487859
Target:  5'- cCGAGCGGC-CCACGGACGCgAccuccgaggACUCGg -3'
miRNA:   3'- -GCUUGCUGcGGUGCCUGUGgU---------UGAGC- -5'
11100 5' -54.1 NC_002794.1 + 125334 0.78 0.497247
Target:  5'- gGAGCG-CGCCACGGcGCACCGGCa-- -3'
miRNA:   3'- gCUUGCuGCGGUGCC-UGUGGUUGagc -5'
11100 5' -54.1 NC_002794.1 + 32285 0.77 0.56496
Target:  5'- gCGAGCGACGCCgccgccgccgcgGCGGccGCGCCGGCcgCGg -3'
miRNA:   3'- -GCUUGCUGCGG------------UGCC--UGUGGUUGa-GC- -5'
11100 5' -54.1 NC_002794.1 + 111564 0.77 0.56496
Target:  5'- ---cCGGCGCCagcgcggucacuACGGugGCCAGCUCGa -3'
miRNA:   3'- gcuuGCUGCGG------------UGCCugUGGUUGAGC- -5'
11100 5' -54.1 NC_002794.1 + 64844 0.76 0.584794
Target:  5'- cCGGACGGCGCgGCGG-CACCucgacgugccGCUCGa -3'
miRNA:   3'- -GCUUGCUGCGgUGCCuGUGGu---------UGAGC- -5'
11100 5' -54.1 NC_002794.1 + 153921 0.76 0.603759
Target:  5'- cCGAcagguccGCGAuCGCCGCGGACACUcgcuGGCUCu -3'
miRNA:   3'- -GCU-------UGCU-GCGGUGCCUGUGG----UUGAGc -5'
11100 5' -54.1 NC_002794.1 + 141648 0.76 0.60476
Target:  5'- -cGGCGugGCCGCGGcCGCCGGCgggUCGa -3'
miRNA:   3'- gcUUGCugCGGUGCCuGUGGUUG---AGC- -5'
11100 5' -54.1 NC_002794.1 + 40450 0.76 0.614775
Target:  5'- gGAGCGAUGCCcCGGGCGCUgucccuucgggcGGCUCa -3'
miRNA:   3'- gCUUGCUGCGGuGCCUGUGG------------UUGAGc -5'
11100 5' -54.1 NC_002794.1 + 70332 0.75 0.624803
Target:  5'- gCGAA-GACGCCGacggcCGGGCGCCcGCUCGu -3'
miRNA:   3'- -GCUUgCUGCGGU-----GCCUGUGGuUGAGC- -5'
11100 5' -54.1 NC_002794.1 + 107240 0.75 0.654889
Target:  5'- gGGGCGGCGUCGCGGAC-CUGGCcCGg -3'
miRNA:   3'- gCUUGCUGCGGUGCCUGuGGUUGaGC- -5'
11100 5' -54.1 NC_002794.1 + 108196 0.75 0.664893
Target:  5'- gCGAGCGGCGCUGCGccgccGCGCCGGcCUCGc -3'
miRNA:   3'- -GCUUGCUGCGGUGCc----UGUGGUU-GAGC- -5'
11100 5' -54.1 NC_002794.1 + 47941 0.75 0.674872
Target:  5'- aGAuCGGCGCCGCGcgucccGGCGCCGGCUgGg -3'
miRNA:   3'- gCUuGCUGCGGUGC------CUGUGGUUGAgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.