miRNA display CGI


Results 21 - 40 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11100 5' -54.1 NC_002794.1 + 145766 0.75 0.674872
Target:  5'- cCGAGCGAgCGCCACGcGGagucguccccgGCCGGCUCGg -3'
miRNA:   3'- -GCUUGCU-GCGGUGC-CUg----------UGGUUGAGC- -5'
11100 5' -54.1 NC_002794.1 + 69289 0.74 0.714368
Target:  5'- cCGAACGcCGCCACuGcCGCCAccACUCGu -3'
miRNA:   3'- -GCUUGCuGCGGUGcCuGUGGU--UGAGC- -5'
11100 5' -54.1 NC_002794.1 + 113501 0.74 0.714368
Target:  5'- gCGcGCGGCcgagaGCCGCGGAgggagcucCGCCGGCUCGg -3'
miRNA:   3'- -GCuUGCUG-----CGGUGCCU--------GUGGUUGAGC- -5'
11100 5' -54.1 NC_002794.1 + 44205 0.74 0.724094
Target:  5'- cCGGGcCGACGUCcggcuCGGGCGCCGaggGCUCGg -3'
miRNA:   3'- -GCUU-GCUGCGGu----GCCUGUGGU---UGAGC- -5'
11100 5' -54.1 NC_002794.1 + 147065 0.73 0.733745
Target:  5'- aGGACGGaGCCGCGGGCGCCcGgUCc -3'
miRNA:   3'- gCUUGCUgCGGUGCCUGUGGuUgAGc -5'
11100 5' -54.1 NC_002794.1 + 194328 0.73 0.743311
Target:  5'- gCGGAUcGCGCCACGGGCucuCCGACg-- -3'
miRNA:   3'- -GCUUGcUGCGGUGCCUGu--GGUUGagc -5'
11100 5' -54.1 NC_002794.1 + 130672 0.73 0.743311
Target:  5'- gCGGGCucCGCCGCGGccucgugggagGCGCCGugUCGg -3'
miRNA:   3'- -GCUUGcuGCGGUGCC-----------UGUGGUugAGC- -5'
11100 5' -54.1 NC_002794.1 + 136766 0.73 0.752784
Target:  5'- gCGGACGcGCGCCACGc---CCAGCUCGa -3'
miRNA:   3'- -GCUUGC-UGCGGUGCcuguGGUUGAGC- -5'
11100 5' -54.1 NC_002794.1 + 104438 0.73 0.752784
Target:  5'- cCGGACGcCGCCGCGGGCgGCCcgAGCcCGg -3'
miRNA:   3'- -GCUUGCuGCGGUGCCUG-UGG--UUGaGC- -5'
11100 5' -54.1 NC_002794.1 + 121040 0.73 0.762154
Target:  5'- aGAGCGGCGCguCGGGCGCCGc---- -3'
miRNA:   3'- gCUUGCUGCGguGCCUGUGGUugagc -5'
11100 5' -54.1 NC_002794.1 + 145832 0.73 0.762154
Target:  5'- cCGAGCG-CGUCgACGGuCGCCAcGCUCGa -3'
miRNA:   3'- -GCUUGCuGCGG-UGCCuGUGGU-UGAGC- -5'
11100 5' -54.1 NC_002794.1 + 79825 0.73 0.771414
Target:  5'- cCGAGUGGCGCCAgGuGACGCCGAgaUCGa -3'
miRNA:   3'- -GCUUGCUGCGGUgC-CUGUGGUUg-AGC- -5'
11100 5' -54.1 NC_002794.1 + 175423 0.73 0.771414
Target:  5'- uGAGCGAUGCCGCGG-CGCaGACgaUCGu -3'
miRNA:   3'- gCUUGCUGCGGUGCCuGUGgUUG--AGC- -5'
11100 5' -54.1 NC_002794.1 + 49601 0.73 0.780554
Target:  5'- gCGAuCGGCGaCgGCGGGCGCCGGCggCGc -3'
miRNA:   3'- -GCUuGCUGC-GgUGCCUGUGGUUGa-GC- -5'
11100 5' -54.1 NC_002794.1 + 150598 0.73 0.780554
Target:  5'- cCGAG-GACGgC-CGGGCGCCGGCUCu -3'
miRNA:   3'- -GCUUgCUGCgGuGCCUGUGGUUGAGc -5'
11100 5' -54.1 NC_002794.1 + 12184 0.72 0.789567
Target:  5'- -cGACGcCGCCGCGGccggGCGCC-GCUCGg -3'
miRNA:   3'- gcUUGCuGCGGUGCC----UGUGGuUGAGC- -5'
11100 5' -54.1 NC_002794.1 + 137448 0.72 0.789567
Target:  5'- gGAACGACuCgGCGGAaucCGCCGugUCGg -3'
miRNA:   3'- gCUUGCUGcGgUGCCU---GUGGUugAGC- -5'
11100 5' -54.1 NC_002794.1 + 14645 0.72 0.798442
Target:  5'- aCGGAgacgcCGGCGCCGCGGcgucGguCCGACUCGc -3'
miRNA:   3'- -GCUU-----GCUGCGGUGCC----UguGGUUGAGC- -5'
11100 5' -54.1 NC_002794.1 + 67757 0.72 0.798442
Target:  5'- gGAucACGGC-UCGCGGcaACGCCAGCUCGg -3'
miRNA:   3'- gCU--UGCUGcGGUGCC--UGUGGUUGAGC- -5'
11100 5' -54.1 NC_002794.1 + 76800 0.72 0.807174
Target:  5'- gCGAGCGGCGaCCAcCGGACcggacgucacGCCAGCggcCGg -3'
miRNA:   3'- -GCUUGCUGC-GGU-GCCUG----------UGGUUGa--GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.