miRNA display CGI


Results 41 - 60 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11100 5' -54.1 NC_002794.1 + 37747 0.72 0.807174
Target:  5'- cCGGcgGCGGCGCgGCGG-CGCCGGCgggagCGg -3'
miRNA:   3'- -GCU--UGCUGCGgUGCCuGUGGUUGa----GC- -5'
11100 5' -54.1 NC_002794.1 + 145571 0.72 0.807174
Target:  5'- gCGGACGAgCGCCgACGGAgcggcgGCCGGCUCc -3'
miRNA:   3'- -GCUUGCU-GCGG-UGCCUg-----UGGUUGAGc -5'
11100 5' -54.1 NC_002794.1 + 123828 0.72 0.813196
Target:  5'- gGAGCGGCGCCcgucgaucCGGAUGCCGggcgucagccacguGCUCGc -3'
miRNA:   3'- gCUUGCUGCGGu-------GCCUGUGGU--------------UGAGC- -5'
11100 5' -54.1 NC_002794.1 + 194942 0.72 0.814902
Target:  5'- cCGAcgGCGACGUCgucagcaGCGGcacgaACGCCGGCUCGu -3'
miRNA:   3'- -GCU--UGCUGCGG-------UGCC-----UGUGGUUGAGC- -5'
11100 5' -54.1 NC_002794.1 + 61864 0.72 0.815753
Target:  5'- uGGACGACGCCGCGcgccgucgucGGCGCCGcGCggCGa -3'
miRNA:   3'- gCUUGCUGCGGUGC----------CUGUGGU-UGa-GC- -5'
11100 5' -54.1 NC_002794.1 + 64721 0.72 0.815753
Target:  5'- aCGAcgACGAggauccuuuCGCCACGGGCACCGAa--- -3'
miRNA:   3'- -GCU--UGCU---------GCGGUGCCUGUGGUUgagc -5'
11100 5' -54.1 NC_002794.1 + 62504 0.72 0.824172
Target:  5'- gCGGGCGGCGCCGCcGGCGCCuccGCcCa -3'
miRNA:   3'- -GCUUGCUGCGGUGcCUGUGGu--UGaGc -5'
11100 5' -54.1 NC_002794.1 + 53312 0.72 0.824172
Target:  5'- uCGGcCGGCGCCGC-GAgAUCGGCUCGa -3'
miRNA:   3'- -GCUuGCUGCGGUGcCUgUGGUUGAGC- -5'
11100 5' -54.1 NC_002794.1 + 114193 0.72 0.827493
Target:  5'- gCGcAGCGGCGCCACGGccggcgucuccggcgGCAgCCAGC-CGa -3'
miRNA:   3'- -GC-UUGCUGCGGUGCC---------------UGU-GGUUGaGC- -5'
11100 5' -54.1 NC_002794.1 + 187014 0.71 0.832423
Target:  5'- aGGuACGGCGUCAgCGGgugccgauACACCGGCUCGc -3'
miRNA:   3'- gCU-UGCUGCGGU-GCC--------UGUGGUUGAGC- -5'
11100 5' -54.1 NC_002794.1 + 106349 0.71 0.832423
Target:  5'- cCGGGuCGACGgCggGCGGGCGCCggUUCGc -3'
miRNA:   3'- -GCUU-GCUGCgG--UGCCUGUGGuuGAGC- -5'
11100 5' -54.1 NC_002794.1 + 114744 0.71 0.832423
Target:  5'- uCGAGcCGGCGCCGCccgccGGCGCCGGucCUCGg -3'
miRNA:   3'- -GCUU-GCUGCGGUGc----CUGUGGUU--GAGC- -5'
11100 5' -54.1 NC_002794.1 + 120056 0.71 0.832423
Target:  5'- gCGGugG-CgGCCGCGGAgGCCGACgCGg -3'
miRNA:   3'- -GCUugCuG-CGGUGCCUgUGGUUGaGC- -5'
11100 5' -54.1 NC_002794.1 + 35762 0.71 0.840499
Target:  5'- -cAACGACGUCGCGGcaccguCGCCGGCgUCGu -3'
miRNA:   3'- gcUUGCUGCGGUGCCu-----GUGGUUG-AGC- -5'
11100 5' -54.1 NC_002794.1 + 8120 0.71 0.848393
Target:  5'- gCGGGCGGCgGCCuccuCGGugACCGGCgaCGg -3'
miRNA:   3'- -GCUUGCUG-CGGu---GCCugUGGUUGa-GC- -5'
11100 5' -54.1 NC_002794.1 + 36200 0.71 0.848393
Target:  5'- -uGACGugGCaCACGGcCACCAGCa-- -3'
miRNA:   3'- gcUUGCugCG-GUGCCuGUGGUUGagc -5'
11100 5' -54.1 NC_002794.1 + 129901 0.71 0.848393
Target:  5'- gCGAACGGCG-CugGGAgCACgCGAUUCGc -3'
miRNA:   3'- -GCUUGCUGCgGugCCU-GUG-GUUGAGC- -5'
11100 5' -54.1 NC_002794.1 + 137419 0.71 0.855336
Target:  5'- ----gGACGCCGCGGAgACCGcgccggcGCUCu -3'
miRNA:   3'- gcuugCUGCGGUGCCUgUGGU-------UGAGc -5'
11100 5' -54.1 NC_002794.1 + 89708 0.71 0.856098
Target:  5'- -aAACGGCGCCGCGG-UGCCGAUcCGc -3'
miRNA:   3'- gcUUGCUGCGGUGCCuGUGGUUGaGC- -5'
11100 5' -54.1 NC_002794.1 + 38602 0.71 0.856098
Target:  5'- cCGGACGAgagGCCggACGGGCGcgucCCGACUCGc -3'
miRNA:   3'- -GCUUGCUg--CGG--UGCCUGU----GGUUGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.