miRNA display CGI


Results 61 - 80 of 244 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11100 5' -54.1 NC_002794.1 + 91228 0.71 0.862866
Target:  5'- gCGGACGGCGCgGCGGccgucggGCugC-GCUCGc -3'
miRNA:   3'- -GCUUGCUGCGgUGCC-------UGugGuUGAGC- -5'
11100 5' -54.1 NC_002794.1 + 99588 0.71 0.863608
Target:  5'- gCGGAgGGCGCgGCGGcggcgcgcgcucGCGCCGcCUCGg -3'
miRNA:   3'- -GCUUgCUGCGgUGCC------------UGUGGUuGAGC- -5'
11100 5' -54.1 NC_002794.1 + 180694 0.71 0.863608
Target:  5'- ---cCGGCGCCcgGCGGGCggACCAugGCUCGg -3'
miRNA:   3'- gcuuGCUGCGG--UGCCUG--UGGU--UGAGC- -5'
11100 5' -54.1 NC_002794.1 + 147562 0.71 0.863608
Target:  5'- cCGAACGACcuggccaagGCCgaGCGGcACACCGaggcGCUCGc -3'
miRNA:   3'- -GCUUGCUG---------CGG--UGCC-UGUGGU----UGAGC- -5'
11100 5' -54.1 NC_002794.1 + 40126 0.71 0.863608
Target:  5'- aGAGCGGagaGCCACGGGCucuCCGcgGCUUc -3'
miRNA:   3'- gCUUGCUg--CGGUGCCUGu--GGU--UGAGc -5'
11100 5' -54.1 NC_002794.1 + 119909 0.7 0.870918
Target:  5'- gCGGcCGACGCCGgGGACAUCcGCaCGg -3'
miRNA:   3'- -GCUuGCUGCGGUgCCUGUGGuUGaGC- -5'
11100 5' -54.1 NC_002794.1 + 40339 0.7 0.870918
Target:  5'- gCGGACG-CGCCAcCGGcgGCGCCGccuCUCGu -3'
miRNA:   3'- -GCUUGCuGCGGU-GCC--UGUGGUu--GAGC- -5'
11100 5' -54.1 NC_002794.1 + 55207 0.7 0.870918
Target:  5'- ---cCGGCGCgGCGGAgGCCGGCggUCGa -3'
miRNA:   3'- gcuuGCUGCGgUGCCUgUGGUUG--AGC- -5'
11100 5' -54.1 NC_002794.1 + 80053 0.7 0.878023
Target:  5'- cCGGcGCGA-GCCGCGGuacuuggccCGCCAGCUCGc -3'
miRNA:   3'- -GCU-UGCUgCGGUGCCu--------GUGGUUGAGC- -5'
11100 5' -54.1 NC_002794.1 + 67385 0.7 0.878023
Target:  5'- aGAACGcgucgGCGCCAgCGucGGCGCCAGCgUCGg -3'
miRNA:   3'- gCUUGC-----UGCGGU-GC--CUGUGGUUG-AGC- -5'
11100 5' -54.1 NC_002794.1 + 35878 0.7 0.884916
Target:  5'- aCGAACGAgagagGCCGuCGGACACagagaccccgaGACUCGg -3'
miRNA:   3'- -GCUUGCUg----CGGU-GCCUGUGg----------UUGAGC- -5'
11100 5' -54.1 NC_002794.1 + 31051 0.7 0.884916
Target:  5'- aGGGCaGCGgCACGGcgGCCAGCUCGc -3'
miRNA:   3'- gCUUGcUGCgGUGCCugUGGUUGAGC- -5'
11100 5' -54.1 NC_002794.1 + 58383 0.7 0.884916
Target:  5'- aGGA-GGCG-CGCGGGCGCCAGCUg- -3'
miRNA:   3'- gCUUgCUGCgGUGCCUGUGGUUGAgc -5'
11100 5' -54.1 NC_002794.1 + 137634 0.7 0.884916
Target:  5'- -cGACGACGUCcugGCGGGCGCCGGgcCUCc -3'
miRNA:   3'- gcUUGCUGCGG---UGCCUGUGGUU--GAGc -5'
11100 5' -54.1 NC_002794.1 + 184996 0.7 0.890936
Target:  5'- gCGAagcgGCGGcCGCCcacgggacucagcACGGugACCAGCUCc -3'
miRNA:   3'- -GCU----UGCU-GCGG-------------UGCCugUGGUUGAGc -5'
11100 5' -54.1 NC_002794.1 + 153713 0.7 0.891594
Target:  5'- gCGAccGCGACGUCACcGACGCCgAGC-CGa -3'
miRNA:   3'- -GCU--UGCUGCGGUGcCUGUGG-UUGaGC- -5'
11100 5' -54.1 NC_002794.1 + 40382 0.7 0.891594
Target:  5'- aCGGGCaACGCCACcacuCGCCGAUUCGg -3'
miRNA:   3'- -GCUUGcUGCGGUGccu-GUGGUUGAGC- -5'
11100 5' -54.1 NC_002794.1 + 62058 0.7 0.891594
Target:  5'- uGGcCGACGCCgGCGGcgACGCCGGCggCGa -3'
miRNA:   3'- gCUuGCUGCGG-UGCC--UGUGGUUGa-GC- -5'
11100 5' -54.1 NC_002794.1 + 32556 0.7 0.891594
Target:  5'- gGAACGGCaGCCGCGGAUAgUcGCgcgCGg -3'
miRNA:   3'- gCUUGCUG-CGGUGCCUGUgGuUGa--GC- -5'
11100 5' -54.1 NC_002794.1 + 184531 0.7 0.891594
Target:  5'- gCGGGCGACGCCGCccacCGCCGcCUCu -3'
miRNA:   3'- -GCUUGCUGCGGUGccu-GUGGUuGAGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.