miRNA display CGI


Results 1 - 20 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11100 5' -54.1 NC_002794.1 + 26 0.67 0.970487
Target:  5'- aCGAaaACGAggcCGCCGCGGGCucucggacgaacgGCCGACg-- -3'
miRNA:   3'- -GCU--UGCU---GCGGUGCCUG-------------UGGUUGagc -5'
11100 5' -54.1 NC_002794.1 + 556 0.66 0.978372
Target:  5'- cCGGccuCGGCGCgGCGGugGCagguCUCGu -3'
miRNA:   3'- -GCUu--GCUGCGgUGCCugUGguu-GAGC- -5'
11100 5' -54.1 NC_002794.1 + 6927 0.67 0.97349
Target:  5'- aGAAgcCGcagcCGCCGCGcGGCACCcuCUCGg -3'
miRNA:   3'- gCUU--GCu---GCGGUGC-CUGUGGuuGAGC- -5'
11100 5' -54.1 NC_002794.1 + 8041 0.69 0.916089
Target:  5'- cCGAGgaaGACGCCGCaccgucuuggcgGGGCGCCAAgaCGg -3'
miRNA:   3'- -GCUUg--CUGCGGUG------------CCUGUGGUUgaGC- -5'
11100 5' -54.1 NC_002794.1 + 8120 0.71 0.848393
Target:  5'- gCGGGCGGCgGCCuccuCGGugACCGGCgaCGg -3'
miRNA:   3'- -GCUUGCUG-CGGu---GCCugUGGUUGa-GC- -5'
11100 5' -54.1 NC_002794.1 + 11921 0.67 0.96142
Target:  5'- -uGACGACgGCCACGGugAUCGcgaUCGc -3'
miRNA:   3'- gcUUGCUG-CGGUGCCugUGGUug-AGC- -5'
11100 5' -54.1 NC_002794.1 + 12184 0.72 0.789567
Target:  5'- -cGACGcCGCCGCGGccggGCGCC-GCUCGg -3'
miRNA:   3'- gcUUGCuGCGGUGCC----UGUGGuUGAGC- -5'
11100 5' -54.1 NC_002794.1 + 12237 0.68 0.936938
Target:  5'- -cGGCGGCGCCGucCGcGGCGCCGAUcCGg -3'
miRNA:   3'- gcUUGCUGCGGU--GC-CUGUGGUUGaGC- -5'
11100 5' -54.1 NC_002794.1 + 12541 0.68 0.936938
Target:  5'- gGAacGCGGCGCgCACGGcUACCGGCgcaUCGc -3'
miRNA:   3'- gCU--UGCUGCG-GUGCCuGUGGUUG---AGC- -5'
11100 5' -54.1 NC_002794.1 + 14438 0.68 0.941578
Target:  5'- uGAucuucuCGAUGCUccGCGGGCgACCGugUCGa -3'
miRNA:   3'- gCUu-----GCUGCGG--UGCCUG-UGGUugAGC- -5'
11100 5' -54.1 NC_002794.1 + 14514 0.67 0.97349
Target:  5'- --cGCGGCGCU-CGuGGCGCC-GCUCGg -3'
miRNA:   3'- gcuUGCUGCGGuGC-CUGUGGuUGAGC- -5'
11100 5' -54.1 NC_002794.1 + 14645 0.72 0.798442
Target:  5'- aCGGAgacgcCGGCGCCGCGGcgucGguCCGACUCGc -3'
miRNA:   3'- -GCUU-----GCUGCGGUGCC----UguGGUUGAGC- -5'
11100 5' -54.1 NC_002794.1 + 17584 0.69 0.920553
Target:  5'- cCGGAccCGACGCCACcGACGCCucgguccccacCUCGa -3'
miRNA:   3'- -GCUU--GCUGCGGUGcCUGUGGuu---------GAGC- -5'
11100 5' -54.1 NC_002794.1 + 17634 0.69 0.926973
Target:  5'- gCGAGCGAucccgcCGCCGCGGcCGCCGccAC-CGc -3'
miRNA:   3'- -GCUUGCU------GCGGUGCCuGUGGU--UGaGC- -5'
11100 5' -54.1 NC_002794.1 + 17977 0.68 0.941578
Target:  5'- uGAGCcuGGCGcCCACGGcCGCCGGCg-- -3'
miRNA:   3'- gCUUG--CUGC-GGUGCCuGUGGUUGagc -5'
11100 5' -54.1 NC_002794.1 + 18761 0.69 0.926973
Target:  5'- gCGGcaACGACucucuaGCCACGaccguCGCCAACUCGa -3'
miRNA:   3'- -GCU--UGCUG------CGGUGCcu---GUGGUUGAGC- -5'
11100 5' -54.1 NC_002794.1 + 18865 0.69 0.910304
Target:  5'- cCGAuCGccaACGCCACcGACGCCGGCgCGg -3'
miRNA:   3'- -GCUuGC---UGCGGUGcCUGUGGUUGaGC- -5'
11100 5' -54.1 NC_002794.1 + 21374 0.67 0.97349
Target:  5'- gCGGcgGCGGcCGCCGucucuuccuCGGACACCGccgGCUCc -3'
miRNA:   3'- -GCU--UGCU-GCGGU---------GCCUGUGGU---UGAGc -5'
11100 5' -54.1 NC_002794.1 + 21701 0.66 0.982555
Target:  5'- cCGccuCGGCGuCCACGGGCGCUGcgUCGc -3'
miRNA:   3'- -GCuu-GCUGC-GGUGCCUGUGGUugAGC- -5'
11100 5' -54.1 NC_002794.1 + 22167 0.67 0.964741
Target:  5'- uGAGCaccGGCGCucCACGGACGgCCgGACUCa -3'
miRNA:   3'- gCUUG---CUGCG--GUGCCUGU-GG-UUGAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.