miRNA display CGI


Results 21 - 40 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11100 5' -54.1 NC_002794.1 + 22908 0.68 0.950177
Target:  5'- gGAcgGCGGCGaCCGCGGcCGCCAAacCGg -3'
miRNA:   3'- gCU--UGCUGC-GGUGCCuGUGGUUgaGC- -5'
11100 5' -54.1 NC_002794.1 + 23608 0.68 0.94599
Target:  5'- cCGAccCGACcCCGCGGGCGCCcgGACgcgCGg -3'
miRNA:   3'- -GCUu-GCUGcGGUGCCUGUGG--UUGa--GC- -5'
11100 5' -54.1 NC_002794.1 + 23717 0.67 0.97349
Target:  5'- cCGAACcgcGCGCgGCGGGC-CCGACg-- -3'
miRNA:   3'- -GCUUGc--UGCGgUGCCUGuGGUUGagc -5'
11100 5' -54.1 NC_002794.1 + 23931 0.68 0.954143
Target:  5'- gCGAGCGAUccgagcccgGCCGCGGcGCACUuGGCUCc -3'
miRNA:   3'- -GCUUGCUG---------CGGUGCC-UGUGG-UUGAGc -5'
11100 5' -54.1 NC_002794.1 + 31051 0.7 0.884916
Target:  5'- aGGGCaGCGgCACGGcgGCCAGCUCGc -3'
miRNA:   3'- gCUUGcUGCgGUGCCugUGGUUGAGC- -5'
11100 5' -54.1 NC_002794.1 + 32285 0.77 0.56496
Target:  5'- gCGAGCGACGCCgccgccgccgcgGCGGccGCGCCGGCcgCGg -3'
miRNA:   3'- -GCUUGCUGCGG------------UGCC--UGUGGUUGa-GC- -5'
11100 5' -54.1 NC_002794.1 + 32556 0.7 0.891594
Target:  5'- gGAACGGCaGCCGCGGAUAgUcGCgcgCGg -3'
miRNA:   3'- gCUUGCUG-CGGUGCCUGUgGuUGa--GC- -5'
11100 5' -54.1 NC_002794.1 + 33584 0.67 0.961076
Target:  5'- uGGugGAcCGCCugcgGCGGACGcgcauccCCAACUCc -3'
miRNA:   3'- gCUugCU-GCGG----UGCCUGU-------GGUUGAGc -5'
11100 5' -54.1 NC_002794.1 + 34372 0.67 0.964741
Target:  5'- uGGACGACaacaCgGCGGugGCCAACa-- -3'
miRNA:   3'- gCUUGCUGc---GgUGCCugUGGUUGagc -5'
11100 5' -54.1 NC_002794.1 + 34718 0.67 0.97077
Target:  5'- ---cCGGCGCCACGaGGCGCgGGCg-- -3'
miRNA:   3'- gcuuGCUGCGGUGC-CUGUGgUUGagc -5'
11100 5' -54.1 NC_002794.1 + 34765 0.67 0.97349
Target:  5'- gGGACG-CGgCACGGccgcccGCGCCAGC-CGa -3'
miRNA:   3'- gCUUGCuGCgGUGCC------UGUGGUUGaGC- -5'
11100 5' -54.1 NC_002794.1 + 34801 0.7 0.904291
Target:  5'- cCGAAcCGGCccggGCCGCGcGACACCAccccCUCGc -3'
miRNA:   3'- -GCUU-GCUG----CGGUGC-CUGUGGUu---GAGC- -5'
11100 5' -54.1 NC_002794.1 + 34857 0.79 0.433421
Target:  5'- gGAGCgGGCGCCGCGGGCGCCGcggACgccgCGa -3'
miRNA:   3'- gCUUG-CUGCGGUGCCUGUGGU---UGa---GC- -5'
11100 5' -54.1 NC_002794.1 + 35762 0.71 0.840499
Target:  5'- -cAACGACGUCGCGGcaccguCGCCGGCgUCGu -3'
miRNA:   3'- gcUUGCUGCGGUGCCu-----GUGGUUG-AGC- -5'
11100 5' -54.1 NC_002794.1 + 35878 0.7 0.884916
Target:  5'- aCGAACGAgagagGCCGuCGGACACagagaccccgaGACUCGg -3'
miRNA:   3'- -GCUUGCUg----CGGU-GCCUGUGg----------UUGAGC- -5'
11100 5' -54.1 NC_002794.1 + 36200 0.71 0.848393
Target:  5'- -uGACGugGCaCACGGcCACCAGCa-- -3'
miRNA:   3'- gcUUGCugCG-GUGCCuGUGGUUGagc -5'
11100 5' -54.1 NC_002794.1 + 37071 0.66 0.976022
Target:  5'- uCGuacuCGGCGaaGCGGGCGCCGuugagccgguACUCGu -3'
miRNA:   3'- -GCuu--GCUGCggUGCCUGUGGU----------UGAGC- -5'
11100 5' -54.1 NC_002794.1 + 37618 0.69 0.910304
Target:  5'- aGAAggUGACGUCGCGGACcCCGuagccGCUCu -3'
miRNA:   3'- gCUU--GCUGCGGUGCCUGuGGU-----UGAGc -5'
11100 5' -54.1 NC_002794.1 + 37747 0.72 0.807174
Target:  5'- cCGGcgGCGGCGCgGCGG-CGCCGGCgggagCGg -3'
miRNA:   3'- -GCU--UGCUGCGgUGCCuGUGGUUGa----GC- -5'
11100 5' -54.1 NC_002794.1 + 37891 0.67 0.96142
Target:  5'- gGGGCgGugGCgGCGG-CAgCGGCUCGc -3'
miRNA:   3'- gCUUG-CugCGgUGCCuGUgGUUGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.