miRNA display CGI


Results 41 - 60 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11100 5' -54.1 NC_002794.1 + 38602 0.71 0.856098
Target:  5'- cCGGACGAgagGCCggACGGGCGcgucCCGACUCGc -3'
miRNA:   3'- -GCUUGCUg--CGG--UGCCUGU----GGUUGAGC- -5'
11100 5' -54.1 NC_002794.1 + 38637 0.69 0.93207
Target:  5'- cCGGuGCGGCGCgACGGAgGCuCGACUa- -3'
miRNA:   3'- -GCU-UGCUGCGgUGCCUgUG-GUUGAgc -5'
11100 5' -54.1 NC_002794.1 + 40126 0.71 0.863608
Target:  5'- aGAGCGGagaGCCACGGGCucuCCGcgGCUUc -3'
miRNA:   3'- gCUUGCUg--CGGUGCCUGu--GGU--UGAGc -5'
11100 5' -54.1 NC_002794.1 + 40339 0.7 0.870918
Target:  5'- gCGGACG-CGCCAcCGGcgGCGCCGccuCUCGu -3'
miRNA:   3'- -GCUUGCuGCGGU-GCC--UGUGGUu--GAGC- -5'
11100 5' -54.1 NC_002794.1 + 40382 0.7 0.891594
Target:  5'- aCGGGCaACGCCACcacuCGCCGAUUCGg -3'
miRNA:   3'- -GCUUGcUGCGGUGccu-GUGGUUGAGC- -5'
11100 5' -54.1 NC_002794.1 + 40450 0.76 0.614775
Target:  5'- gGAGCGAUGCCcCGGGCGCUgucccuucgggcGGCUCa -3'
miRNA:   3'- gCUUGCUGCGGuGCCUGUGG------------UUGAGc -5'
11100 5' -54.1 NC_002794.1 + 41230 0.66 0.978372
Target:  5'- gGGAUuccucccACGCCGCGGcCGCCGACgccggCGg -3'
miRNA:   3'- gCUUGc------UGCGGUGCCuGUGGUUGa----GC- -5'
11100 5' -54.1 NC_002794.1 + 41592 0.68 0.941578
Target:  5'- aCGGACGGCGCCu----CGCCGACgUCGc -3'
miRNA:   3'- -GCUUGCUGCGGugccuGUGGUUG-AGC- -5'
11100 5' -54.1 NC_002794.1 + 44205 0.74 0.724094
Target:  5'- cCGGGcCGACGUCcggcuCGGGCGCCGaggGCUCGg -3'
miRNA:   3'- -GCUU-GCUGCGGu----GCCUGUGGU---UGAGC- -5'
11100 5' -54.1 NC_002794.1 + 44417 0.66 0.980337
Target:  5'- cCGGcCGGCGCCgaGCGGcucgacgACACCGGCgCGc -3'
miRNA:   3'- -GCUuGCUGCGG--UGCC-------UGUGGUUGaGC- -5'
11100 5' -54.1 NC_002794.1 + 44729 0.67 0.964741
Target:  5'- uCGGcCGGCGCCGcCGGAgggcuaagaCGgCGACUCGu -3'
miRNA:   3'- -GCUuGCUGCGGU-GCCU---------GUgGUUGAGC- -5'
11100 5' -54.1 NC_002794.1 + 45368 0.66 0.979913
Target:  5'- aCGcACGuGCGCgagcccgucggccaCACGGGCACCucgcGCUCGu -3'
miRNA:   3'- -GCuUGC-UGCG--------------GUGCCUGUGGu---UGAGC- -5'
11100 5' -54.1 NC_002794.1 + 45920 0.66 0.979913
Target:  5'- cCGGGCGACGaggcucgcgcuuccCCGCccGGugACCGucuCUCGg -3'
miRNA:   3'- -GCUUGCUGC--------------GGUG--CCugUGGUu--GAGC- -5'
11100 5' -54.1 NC_002794.1 + 46323 0.68 0.936938
Target:  5'- gCGAcgGCGccguCGCCGCGGACGgcuCCAuGCUCu -3'
miRNA:   3'- -GCU--UGCu---GCGGUGCCUGU---GGU-UGAGc -5'
11100 5' -54.1 NC_002794.1 + 47941 0.75 0.674872
Target:  5'- aGAuCGGCGCCGCGcgucccGGCGCCGGCUgGg -3'
miRNA:   3'- gCUuGCUGCGGUGC------CUGUGGUUGAgC- -5'
11100 5' -54.1 NC_002794.1 + 49601 0.73 0.780554
Target:  5'- gCGAuCGGCGaCgGCGGGCGCCGGCggCGc -3'
miRNA:   3'- -GCUuGCUGC-GgUGCCUGUGGUUGa-GC- -5'
11100 5' -54.1 NC_002794.1 + 49688 0.66 0.982555
Target:  5'- gCGGACGA-GUCGCGucGGCACgaCGACUCGc -3'
miRNA:   3'- -GCUUGCUgCGGUGC--CUGUG--GUUGAGC- -5'
11100 5' -54.1 NC_002794.1 + 50584 0.68 0.94599
Target:  5'- uGcGCGGCGgCugGGugGCCGGCgcCGg -3'
miRNA:   3'- gCuUGCUGCgGugCCugUGGUUGa-GC- -5'
11100 5' -54.1 NC_002794.1 + 50789 0.66 0.983313
Target:  5'- uCGGGCGGCGCCuccucgcccggcguCGGGCGcuCCGGCg-- -3'
miRNA:   3'- -GCUUGCUGCGGu-------------GCCUGU--GGUUGagc -5'
11100 5' -54.1 NC_002794.1 + 52796 0.67 0.967856
Target:  5'- uCGAGC--CGCUcguCGGACGCCGgcaGCUCGu -3'
miRNA:   3'- -GCUUGcuGCGGu--GCCUGUGGU---UGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.