miRNA display CGI


Results 61 - 80 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11100 5' -54.1 NC_002794.1 + 52897 0.66 0.976022
Target:  5'- uCGAacGCGGCGCCGCcgccGuCGCCGccgccgucGCUCGg -3'
miRNA:   3'- -GCU--UGCUGCGGUGc---CuGUGGU--------UGAGC- -5'
11100 5' -54.1 NC_002794.1 + 53065 0.69 0.916089
Target:  5'- -aGGCaGCGCCGCGc-CGCCAGCUCGc -3'
miRNA:   3'- gcUUGcUGCGGUGCcuGUGGUUGAGC- -5'
11100 5' -54.1 NC_002794.1 + 53312 0.72 0.824172
Target:  5'- uCGGcCGGCGCCGC-GAgAUCGGCUCGa -3'
miRNA:   3'- -GCUuGCUGCGGUGcCUgUGGUUGAGC- -5'
11100 5' -54.1 NC_002794.1 + 53924 0.66 0.980547
Target:  5'- -cGGCGGCGCCGCcGA-ACCgAGCUCGc -3'
miRNA:   3'- gcUUGCUGCGGUGcCUgUGG-UUGAGC- -5'
11100 5' -54.1 NC_002794.1 + 54247 0.66 0.980547
Target:  5'- cCGAGCGcGCGguCCACGG-CGCCGcgUCGg -3'
miRNA:   3'- -GCUUGC-UGC--GGUGCCuGUGGUugAGC- -5'
11100 5' -54.1 NC_002794.1 + 54978 0.67 0.964741
Target:  5'- uGcACGAccCGCCGCGGcgacgGCGgCGACUCGc -3'
miRNA:   3'- gCuUGCU--GCGGUGCC-----UGUgGUUGAGC- -5'
11100 5' -54.1 NC_002794.1 + 55207 0.7 0.870918
Target:  5'- ---cCGGCGCgGCGGAgGCCGGCggUCGa -3'
miRNA:   3'- gcuuGCUGCGgUGCCUgUGGUUG--AGC- -5'
11100 5' -54.1 NC_002794.1 + 55979 0.7 0.898054
Target:  5'- uGGAUGGCguaGCCGCGGgcgaGCACCAGCa-- -3'
miRNA:   3'- gCUUGCUG---CGGUGCC----UGUGGUUGagc -5'
11100 5' -54.1 NC_002794.1 + 56904 0.8 0.382683
Target:  5'- cCGcGCGugGCCACGGGCGCCGGgcugccggcCUCGc -3'
miRNA:   3'- -GCuUGCugCGGUGCCUGUGGUU---------GAGC- -5'
11100 5' -54.1 NC_002794.1 + 57111 0.67 0.97349
Target:  5'- aCGGcCGACGCCAUGGAgCGCggccuggugcaCAACUUc -3'
miRNA:   3'- -GCUuGCUGCGGUGCCU-GUG-----------GUUGAGc -5'
11100 5' -54.1 NC_002794.1 + 58383 0.7 0.884916
Target:  5'- aGGA-GGCG-CGCGGGCGCCAGCUg- -3'
miRNA:   3'- gCUUgCUGCgGUGCCUGUGGUUGAgc -5'
11100 5' -54.1 NC_002794.1 + 58921 0.66 0.978372
Target:  5'- uCGGACGugccgcgccugcACGCCAUGGACgaggacgaGCC-GCUCu -3'
miRNA:   3'- -GCUUGC------------UGCGGUGCCUG--------UGGuUGAGc -5'
11100 5' -54.1 NC_002794.1 + 59300 0.68 0.936938
Target:  5'- uCGAcgccGCGcaGCGCCACGGcGCGcCCGACUUc -3'
miRNA:   3'- -GCU----UGC--UGCGGUGCC-UGU-GGUUGAGc -5'
11100 5' -54.1 NC_002794.1 + 60634 0.67 0.964741
Target:  5'- gCGGAccCGGCGCCgGCGG-CGCCGGC-Ca -3'
miRNA:   3'- -GCUU--GCUGCGG-UGCCuGUGGUUGaGc -5'
11100 5' -54.1 NC_002794.1 + 61864 0.72 0.815753
Target:  5'- uGGACGACGCCGCGcgccgucgucGGCGCCGcGCggCGa -3'
miRNA:   3'- gCUUGCUGCGGUGC----------CUGUGGU-UGa-GC- -5'
11100 5' -54.1 NC_002794.1 + 62058 0.7 0.891594
Target:  5'- uGGcCGACGCCgGCGGcgACGCCGGCggCGa -3'
miRNA:   3'- gCUuGCUGCGG-UGCC--UGUGGUUGa-GC- -5'
11100 5' -54.1 NC_002794.1 + 62126 0.69 0.916089
Target:  5'- uCGAGCGAcCGCCACGGcgACcUCGACgcgCGc -3'
miRNA:   3'- -GCUUGCU-GCGGUGCC--UGuGGUUGa--GC- -5'
11100 5' -54.1 NC_002794.1 + 62504 0.72 0.824172
Target:  5'- gCGGGCGGCGCCGCcGGCGCCuccGCcCa -3'
miRNA:   3'- -GCUUGCUGCGGUGcCUGUGGu--UGaGc -5'
11100 5' -54.1 NC_002794.1 + 63493 0.67 0.963766
Target:  5'- -cGACGACGCCGCGGcgucgucguccgcgACGCCucccGCgCGa -3'
miRNA:   3'- gcUUGCUGCGGUGCC--------------UGUGGu---UGaGC- -5'
11100 5' -54.1 NC_002794.1 + 63702 0.65 0.985935
Target:  5'- aCGAcgACGGCGCCGgcgccgcCGGAcCGCCGAUcCa -3'
miRNA:   3'- -GCU--UGCUGCGGU-------GCCU-GUGGUUGaGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.