miRNA display CGI


Results 1 - 20 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11100 5' -54.1 NC_002794.1 + 194942 0.72 0.814902
Target:  5'- cCGAcgGCGACGUCgucagcaGCGGcacgaACGCCGGCUCGu -3'
miRNA:   3'- -GCU--UGCUGCGG-------UGCC-----UGUGGUUGAGC- -5'
11100 5' -54.1 NC_002794.1 + 194328 0.73 0.743311
Target:  5'- gCGGAUcGCGCCACGGGCucuCCGACg-- -3'
miRNA:   3'- -GCUUGcUGCGGUGCCUGu--GGUUGagc -5'
11100 5' -54.1 NC_002794.1 + 193797 0.68 0.954143
Target:  5'- -cGACGACGCC---GGCGCCcGCUCGu -3'
miRNA:   3'- gcUUGCUGCGGugcCUGUGGuUGAGC- -5'
11100 5' -54.1 NC_002794.1 + 191723 0.78 0.487859
Target:  5'- cCGAGCGGC-CCACGGACGCgAccuccgaggACUCGg -3'
miRNA:   3'- -GCUUGCUGcGGUGCCUGUGgU---------UGAGC- -5'
11100 5' -54.1 NC_002794.1 + 190799 0.66 0.976022
Target:  5'- gGGAC-ACGCCGuaacGCGCCAGCUCGu -3'
miRNA:   3'- gCUUGcUGCGGUgcc-UGUGGUUGAGC- -5'
11100 5' -54.1 NC_002794.1 + 189907 0.69 0.926973
Target:  5'- -cAGCGcCGCCGCGcGAcCGCCcGCUCGc -3'
miRNA:   3'- gcUUGCuGCGGUGC-CU-GUGGuUGAGC- -5'
11100 5' -54.1 NC_002794.1 + 188885 0.68 0.94599
Target:  5'- gGAACGGCcagcaGUgGCGG--GCCAGCUCGg -3'
miRNA:   3'- gCUUGCUG-----CGgUGCCugUGGUUGAGC- -5'
11100 5' -54.1 NC_002794.1 + 187492 0.68 0.957889
Target:  5'- aGGACGAgGCCGCgcaggcggccaGGGCGCCcgcggaggAACUCc -3'
miRNA:   3'- gCUUGCUgCGGUG-----------CCUGUGG--------UUGAGc -5'
11100 5' -54.1 NC_002794.1 + 187014 0.71 0.832423
Target:  5'- aGGuACGGCGUCAgCGGgugccgauACACCGGCUCGc -3'
miRNA:   3'- gCU-UGCUGCGGU-GCC--------UGUGGUUGAGC- -5'
11100 5' -54.1 NC_002794.1 + 185843 0.66 0.982555
Target:  5'- uCGAACGGuagaGCCACaGGGCucGCCgAAUUCGc -3'
miRNA:   3'- -GCUUGCUg---CGGUG-CCUG--UGG-UUGAGC- -5'
11100 5' -54.1 NC_002794.1 + 185460 0.67 0.96142
Target:  5'- --cGCGAcaaaCGCCGCGGGCGgCGGCcgCGg -3'
miRNA:   3'- gcuUGCU----GCGGUGCCUGUgGUUGa-GC- -5'
11100 5' -54.1 NC_002794.1 + 185380 0.66 0.978821
Target:  5'- gCGAGCGAgGCCAgccagaagacgaGGGCGCgggcccgaccgccguCGACUCGa -3'
miRNA:   3'- -GCUUGCUgCGGUg-----------CCUGUG---------------GUUGAGC- -5'
11100 5' -54.1 NC_002794.1 + 185254 0.67 0.97077
Target:  5'- aGAAa-GCGCCAgCGGACGCCGccgGC-CGa -3'
miRNA:   3'- gCUUgcUGCGGU-GCCUGUGGU---UGaGC- -5'
11100 5' -54.1 NC_002794.1 + 185128 0.68 0.953756
Target:  5'- aCGAccagGCGGCGCCGCGucgagaaGAuCGCCGACgCGu -3'
miRNA:   3'- -GCU----UGCUGCGGUGC-------CU-GUGGUUGaGC- -5'
11100 5' -54.1 NC_002794.1 + 184996 0.7 0.890936
Target:  5'- gCGAagcgGCGGcCGCCcacgggacucagcACGGugACCAGCUCc -3'
miRNA:   3'- -GCU----UGCU-GCGG-------------UGCCugUGGUUGAGc -5'
11100 5' -54.1 NC_002794.1 + 184759 0.66 0.980547
Target:  5'- -cAGCGuu-CCACGGucaGCGCCGGCUCGc -3'
miRNA:   3'- gcUUGCugcGGUGCC---UGUGGUUGAGC- -5'
11100 5' -54.1 NC_002794.1 + 184531 0.7 0.891594
Target:  5'- gCGGGCGACGCCGCccacCGCCGcCUCu -3'
miRNA:   3'- -GCUUGCUGCGGUGccu-GUGGUuGAGc -5'
11100 5' -54.1 NC_002794.1 + 184477 0.69 0.916089
Target:  5'- gCGAACGGCGCgCGgggcccCGGACGCCcgGGCggcgCGg -3'
miRNA:   3'- -GCUUGCUGCG-GU------GCCUGUGG--UUGa---GC- -5'
11100 5' -54.1 NC_002794.1 + 182991 0.67 0.964741
Target:  5'- aCGGccgGCGcuuCGCCGCGGGCGCCccGCgcgCGc -3'
miRNA:   3'- -GCU---UGCu--GCGGUGCCUGUGGu-UGa--GC- -5'
11100 5' -54.1 NC_002794.1 + 182808 0.66 0.982555
Target:  5'- gCGGuCGACagcucguccaGCCGCGG-CACCGACaCGa -3'
miRNA:   3'- -GCUuGCUG----------CGGUGCCuGUGGUUGaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.