miRNA display CGI


Results 21 - 40 of 244 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11100 5' -54.1 NC_002794.1 + 180736 0.67 0.96142
Target:  5'- gCGGACGACGCCGucCGGcuccuCGgCGGCUuCGg -3'
miRNA:   3'- -GCUUGCUGCGGU--GCCu----GUgGUUGA-GC- -5'
11100 5' -54.1 NC_002794.1 + 180694 0.71 0.863608
Target:  5'- ---cCGGCGCCcgGCGGGCggACCAugGCUCGg -3'
miRNA:   3'- gcuuGCUGCGG--UGCCUG--UGGU--UGAGC- -5'
11100 5' -54.1 NC_002794.1 + 180019 0.67 0.967856
Target:  5'- -cGACGACgGCCGCGGcCGuCCGACcCGc -3'
miRNA:   3'- gcUUGCUG-CGGUGCCuGU-GGUUGaGC- -5'
11100 5' -54.1 NC_002794.1 + 178290 0.67 0.964418
Target:  5'- uCGAGCGACGgcucgaCGCGGgaggcgaACGCCGAacCUCGu -3'
miRNA:   3'- -GCUUGCUGCg-----GUGCC-------UGUGGUU--GAGC- -5'
11100 5' -54.1 NC_002794.1 + 177711 0.67 0.967553
Target:  5'- uCGAucuACGGCGguCCACgGGGCggauccgACCGACUCGc -3'
miRNA:   3'- -GCU---UGCUGC--GGUG-CCUG-------UGGUUGAGC- -5'
11100 5' -54.1 NC_002794.1 + 177565 0.67 0.96142
Target:  5'- gGGACGA-GCUuCGcGACGCCGugACUCGa -3'
miRNA:   3'- gCUUGCUgCGGuGC-CUGUGGU--UGAGC- -5'
11100 5' -54.1 NC_002794.1 + 176549 0.79 0.451184
Target:  5'- uGGGCGACGCgGCGGuGCACCAugUUa -3'
miRNA:   3'- gCUUGCUGCGgUGCC-UGUGGUugAGc -5'
11100 5' -54.1 NC_002794.1 + 175731 0.67 0.972425
Target:  5'- gGAGCGugGCCGugagagcgagucugUGGACGCUAGugaccguUUCGg -3'
miRNA:   3'- gCUUGCugCGGU--------------GCCUGUGGUU-------GAGC- -5'
11100 5' -54.1 NC_002794.1 + 175423 0.73 0.771414
Target:  5'- uGAGCGAUGCCGCGG-CGCaGACgaUCGu -3'
miRNA:   3'- gCUUGCUGCGGUGCCuGUGgUUG--AGC- -5'
11100 5' -54.1 NC_002794.1 + 169140 0.66 0.982555
Target:  5'- cCGGuCGGCGCUACGaGucuACACCGACg-- -3'
miRNA:   3'- -GCUuGCUGCGGUGC-C---UGUGGUUGagc -5'
11100 5' -54.1 NC_002794.1 + 162447 0.69 0.93207
Target:  5'- uGAACGGCaacgGUCGCGGGCAagUAAUUCGg -3'
miRNA:   3'- gCUUGCUG----CGGUGCCUGUg-GUUGAGC- -5'
11100 5' -54.1 NC_002794.1 + 158429 0.66 0.982555
Target:  5'- aCGAACGcACGCCagGCGGGuuCCGcGCUCu -3'
miRNA:   3'- -GCUUGC-UGCGG--UGCCUguGGU-UGAGc -5'
11100 5' -54.1 NC_002794.1 + 157201 0.66 0.982555
Target:  5'- cCGAugGAgacaggucCG-CACGGACACCAccaAgUCGg -3'
miRNA:   3'- -GCUugCU--------GCgGUGCCUGUGGU---UgAGC- -5'
11100 5' -54.1 NC_002794.1 + 156401 0.66 0.976022
Target:  5'- gCGGcCGGCGCCGCGGccGCgGCCAcgGC-CGg -3'
miRNA:   3'- -GCUuGCUGCGGUGCC--UG-UGGU--UGaGC- -5'
11100 5' -54.1 NC_002794.1 + 153921 0.76 0.603759
Target:  5'- cCGAcagguccGCGAuCGCCGCGGACACUcgcuGGCUCu -3'
miRNA:   3'- -GCU-------UGCU-GCGGUGCCUGUGG----UUGAGc -5'
11100 5' -54.1 NC_002794.1 + 153713 0.7 0.891594
Target:  5'- gCGAccGCGACGUCACcGACGCCgAGC-CGa -3'
miRNA:   3'- -GCU--UGCUGCGGUGcCUGUGG-UUGaGC- -5'
11100 5' -54.1 NC_002794.1 + 153413 0.66 0.976022
Target:  5'- gCGAGCGcCGCgCGCGGA-GCCgAGCUgGg -3'
miRNA:   3'- -GCUUGCuGCG-GUGCCUgUGG-UUGAgC- -5'
11100 5' -54.1 NC_002794.1 + 151726 0.68 0.941578
Target:  5'- gCGAAgGACGUCGuCGGcCGCCGgucgccucgcgcGCUCGu -3'
miRNA:   3'- -GCUUgCUGCGGU-GCCuGUGGU------------UGAGC- -5'
11100 5' -54.1 NC_002794.1 + 150598 0.73 0.780554
Target:  5'- cCGAG-GACGgC-CGGGCGCCGGCUCu -3'
miRNA:   3'- -GCUUgCUGCgGuGCCUGUGGUUGAGc -5'
11100 5' -54.1 NC_002794.1 + 150539 0.69 0.916089
Target:  5'- cCGGGcCGGCGCCAUGGccgucucgGCGCUggAGCUCa -3'
miRNA:   3'- -GCUU-GCUGCGGUGCC--------UGUGG--UUGAGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.