miRNA display CGI


Results 41 - 60 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11100 5' -54.1 NC_002794.1 + 149856 0.67 0.97349
Target:  5'- gGGACGAgGa-GCGGcCGCCcGCUCGg -3'
miRNA:   3'- gCUUGCUgCggUGCCuGUGGuUGAGC- -5'
11100 5' -54.1 NC_002794.1 + 147562 0.71 0.863608
Target:  5'- cCGAACGACcuggccaagGCCgaGCGGcACACCGaggcGCUCGc -3'
miRNA:   3'- -GCUUGCUG---------CGG--UGCC-UGUGGU----UGAGC- -5'
11100 5' -54.1 NC_002794.1 + 147065 0.73 0.733745
Target:  5'- aGGACGGaGCCGCGGGCGCCcGgUCc -3'
miRNA:   3'- gCUUGCUgCGGUGCCUGUGGuUgAGc -5'
11100 5' -54.1 NC_002794.1 + 147001 0.68 0.954143
Target:  5'- cCGAcguCGGCgGCgGCGGcCGCCGgcGCUCGg -3'
miRNA:   3'- -GCUu--GCUG-CGgUGCCuGUGGU--UGAGC- -5'
11100 5' -54.1 NC_002794.1 + 145998 0.68 0.954143
Target:  5'- aGAACGGcCGCCGgGGccggagACGCCGucccaguccGCUCGa -3'
miRNA:   3'- gCUUGCU-GCGGUgCC------UGUGGU---------UGAGC- -5'
11100 5' -54.1 NC_002794.1 + 145832 0.73 0.762154
Target:  5'- cCGAGCG-CGUCgACGGuCGCCAcGCUCGa -3'
miRNA:   3'- -GCUUGCuGCGG-UGCCuGUGGU-UGAGC- -5'
11100 5' -54.1 NC_002794.1 + 145766 0.75 0.674872
Target:  5'- cCGAGCGAgCGCCACGcGGagucguccccgGCCGGCUCGg -3'
miRNA:   3'- -GCUUGCU-GCGGUGC-CUg----------UGGUUGAGC- -5'
11100 5' -54.1 NC_002794.1 + 145571 0.72 0.807174
Target:  5'- gCGGACGAgCGCCgACGGAgcggcgGCCGGCUCc -3'
miRNA:   3'- -GCUUGCU-GCGG-UGCCUg-----UGGUUGAGc -5'
11100 5' -54.1 NC_002794.1 + 145328 0.69 0.93207
Target:  5'- gCGGGCGGCGCUcgggcccgaGCGGGC-CCgAGCUgGg -3'
miRNA:   3'- -GCUUGCUGCGG---------UGCCUGuGG-UUGAgC- -5'
11100 5' -54.1 NC_002794.1 + 144911 0.67 0.97349
Target:  5'- uGGGCccCGCCGCcGGCACCAAC-CGc -3'
miRNA:   3'- gCUUGcuGCGGUGcCUGUGGUUGaGC- -5'
11100 5' -54.1 NC_002794.1 + 143745 0.68 0.954143
Target:  5'- cCGGACG-CGCCGCcgggGGGCuCC-GCUCGu -3'
miRNA:   3'- -GCUUGCuGCGGUG----CCUGuGGuUGAGC- -5'
11100 5' -54.1 NC_002794.1 + 141648 0.76 0.60476
Target:  5'- -cGGCGugGCCGCGGcCGCCGGCgggUCGa -3'
miRNA:   3'- gcUUGCugCGGUGCCuGUGGUUG---AGC- -5'
11100 5' -54.1 NC_002794.1 + 141434 0.68 0.957889
Target:  5'- gCGGG-GGCGCCGgGGGCGCCGGgagCGg -3'
miRNA:   3'- -GCUUgCUGCGGUgCCUGUGGUUga-GC- -5'
11100 5' -54.1 NC_002794.1 + 141312 0.67 0.967856
Target:  5'- -cGGCGACGgCACcGGCGUCGGCUCGg -3'
miRNA:   3'- gcUUGCUGCgGUGcCUGUGGUUGAGC- -5'
11100 5' -54.1 NC_002794.1 + 140009 0.69 0.910304
Target:  5'- gGGugGAgGCCGCGGAgGCCGcggcccccGCgggCGg -3'
miRNA:   3'- gCUugCUgCGGUGCCUgUGGU--------UGa--GC- -5'
11100 5' -54.1 NC_002794.1 + 138708 0.66 0.978372
Target:  5'- aGGGCGGCGUggacuCGCGucgaGCCGGCUCGa -3'
miRNA:   3'- gCUUGCUGCG-----GUGCcug-UGGUUGAGC- -5'
11100 5' -54.1 NC_002794.1 + 138406 0.66 0.982555
Target:  5'- uCGAG-GuCGUCGcCGGcCGCCGACUCGu -3'
miRNA:   3'- -GCUUgCuGCGGU-GCCuGUGGUUGAGC- -5'
11100 5' -54.1 NC_002794.1 + 137743 0.68 0.94599
Target:  5'- uGGGcCGACGCUugGaACGgCGGCUCGa -3'
miRNA:   3'- gCUU-GCUGCGGugCcUGUgGUUGAGC- -5'
11100 5' -54.1 NC_002794.1 + 137634 0.7 0.884916
Target:  5'- -cGACGACGUCcugGCGGGCGCCGGgcCUCc -3'
miRNA:   3'- gcUUGCUGCGG---UGCCUGUGGUU--GAGc -5'
11100 5' -54.1 NC_002794.1 + 137487 0.69 0.921646
Target:  5'- aGAGCaGCGCCACGGucgguuccucCGCCGGCguuUCGa -3'
miRNA:   3'- gCUUGcUGCGGUGCCu---------GUGGUUG---AGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.