Results 41 - 60 of 244 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11100 | 5' | -54.1 | NC_002794.1 | + | 83152 | 0.66 | 0.984403 |
Target: 5'- -uGACGACgagucaGCUGCGGACGCU--CUCGg -3' miRNA: 3'- gcUUGCUG------CGGUGCCUGUGGuuGAGC- -5' |
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11100 | 5' | -54.1 | NC_002794.1 | + | 82574 | 0.66 | 0.984403 |
Target: 5'- gCGAGgcCGACGCCgccgagACGGAgACCcuCUCc -3' miRNA: 3'- -GCUU--GCUGCGG------UGCCUgUGGuuGAGc -5' |
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11100 | 5' | -54.1 | NC_002794.1 | + | 66861 | 0.66 | 0.985098 |
Target: 5'- -cGGCGAgGCCGCGGcguGCggcugagccaucgcgGCCGACUCc -3' miRNA: 3'- gcUUGCUgCGGUGCC---UG---------------UGGUUGAGc -5' |
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11100 | 5' | -54.1 | NC_002794.1 | + | 126095 | 0.66 | 0.984403 |
Target: 5'- cCGAcCGACuggcuuccgGCCcUGGGCGCCGcGCUCGu -3' miRNA: 3'- -GCUuGCUG---------CGGuGCCUGUGGU-UGAGC- -5' |
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11100 | 5' | -54.1 | NC_002794.1 | + | 118669 | 0.66 | 0.984403 |
Target: 5'- gGcGCGACGcCCGCGGccgcCGCCGGCg-- -3' miRNA: 3'- gCuUGCUGC-GGUGCCu---GUGGUUGagc -5' |
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11100 | 5' | -54.1 | NC_002794.1 | + | 138406 | 0.66 | 0.982555 |
Target: 5'- uCGAG-GuCGUCGcCGGcCGCCGACUCGu -3' miRNA: 3'- -GCUUgCuGCGGU-GCCuGUGGUUGAGC- -5' |
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11100 | 5' | -54.1 | NC_002794.1 | + | 21701 | 0.66 | 0.982555 |
Target: 5'- cCGccuCGGCGuCCACGGGCGCUGcgUCGc -3' miRNA: 3'- -GCuu-GCUGC-GGUGCCUGUGGUugAGC- -5' |
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11100 | 5' | -54.1 | NC_002794.1 | + | 45368 | 0.66 | 0.979913 |
Target: 5'- aCGcACGuGCGCgagcccgucggccaCACGGGCACCucgcGCUCGu -3' miRNA: 3'- -GCuUGC-UGCG--------------GUGCCUGUGGu---UGAGC- -5' |
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11100 | 5' | -54.1 | NC_002794.1 | + | 44417 | 0.66 | 0.980337 |
Target: 5'- cCGGcCGGCGCCgaGCGGcucgacgACACCGGCgCGc -3' miRNA: 3'- -GCUuGCUGCGG--UGCC-------UGUGGUUGaGC- -5' |
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11100 | 5' | -54.1 | NC_002794.1 | + | 118274 | 0.66 | 0.980337 |
Target: 5'- -cGGCGGCGCCGgcguCGGGgACCGcgccgggcgcgucGCUCGu -3' miRNA: 3'- gcUUGCUGCGGU----GCCUgUGGU-------------UGAGC- -5' |
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11100 | 5' | -54.1 | NC_002794.1 | + | 53924 | 0.66 | 0.980547 |
Target: 5'- -cGGCGGCGCCGCcGA-ACCgAGCUCGc -3' miRNA: 3'- gcUUGCUGCGGUGcCUgUGG-UUGAGC- -5' |
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11100 | 5' | -54.1 | NC_002794.1 | + | 54247 | 0.66 | 0.980547 |
Target: 5'- cCGAGCGcGCGguCCACGG-CGCCGcgUCGg -3' miRNA: 3'- -GCUUGC-UGC--GGUGCCuGUGGUugAGC- -5' |
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11100 | 5' | -54.1 | NC_002794.1 | + | 184759 | 0.66 | 0.980547 |
Target: 5'- -cAGCGuu-CCACGGucaGCGCCGGCUCGc -3' miRNA: 3'- gcUUGCugcGGUGCC---UGUGGUUGAGC- -5' |
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11100 | 5' | -54.1 | NC_002794.1 | + | 83057 | 0.66 | 0.980547 |
Target: 5'- aGGACGAgCGCCcacccACGGGCGCaucguccuCUCGc -3' miRNA: 3'- gCUUGCU-GCGG-----UGCCUGUGguu-----GAGC- -5' |
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11100 | 5' | -54.1 | NC_002794.1 | + | 65232 | 0.66 | 0.980547 |
Target: 5'- aCGGGCGGCggucGCCGCGGcgGCGauCCGGcCUCGc -3' miRNA: 3'- -GCUUGCUG----CGGUGCC--UGU--GGUU-GAGC- -5' |
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11100 | 5' | -54.1 | NC_002794.1 | + | 83873 | 0.66 | 0.980547 |
Target: 5'- cCGGuCGGCGCgACGGcCcCgGGCUCGg -3' miRNA: 3'- -GCUuGCUGCGgUGCCuGuGgUUGAGC- -5' |
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11100 | 5' | -54.1 | NC_002794.1 | + | 112621 | 0.66 | 0.982555 |
Target: 5'- uGcGCGuCGuCCACGGGCGgCuuCUCGa -3' miRNA: 3'- gCuUGCuGC-GGUGCCUGUgGuuGAGC- -5' |
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11100 | 5' | -54.1 | NC_002794.1 | + | 49688 | 0.66 | 0.982555 |
Target: 5'- gCGGACGA-GUCGCGucGGCACgaCGACUCGc -3' miRNA: 3'- -GCUUGCUgCGGUGC--CUGUG--GUUGAGC- -5' |
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11100 | 5' | -54.1 | NC_002794.1 | + | 116635 | 0.66 | 0.982555 |
Target: 5'- aGAGCGGCagggGCC-CGGcCGuCCGGCUCu -3' miRNA: 3'- gCUUGCUG----CGGuGCCuGU-GGUUGAGc -5' |
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11100 | 5' | -54.1 | NC_002794.1 | + | 127611 | 0.66 | 0.982555 |
Target: 5'- uGAGCGGCGCgGacCGGACucgucgucgacGCCGACgacCGa -3' miRNA: 3'- gCUUGCUGCGgU--GCCUG-----------UGGUUGa--GC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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